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extremophiles and spider webs: adventures in genomics Betsey Dexter Dyer Mark D. LeBlanc

extremophiles and spider webs: adventures in genomics Betsey Dexter Dyer Mark D. LeBlanc Wheaton College (Norton, MA). research. research. teaching. You have some creative questions … You like tinkering … You (like an old-time explorer) are adventurous …. methods (in silico).

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extremophiles and spider webs: adventures in genomics Betsey Dexter Dyer Mark D. LeBlanc

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  1. extremophiles and spider webs: adventures in genomics Betsey Dexter Dyer Mark D. LeBlanc Wheaton College (Norton, MA)

  2. . . .

  3. . . .

  4. research

  5. research teaching

  6. You have some creative questions … • You like tinkering … • You (like an old-time explorer) are adventurous … . . .

  7. methods(in silico) (0) wget_bash/wget -r -nv --accept "*.ptt,*.fna" -P genome_data "ftp://ftp.ncbi.nih.gov/genomes/Bacteria/" • my $add_org_sql = "INSERT INTO organisms (genus, species, strain, ncbi_directory) VALUES (?,?,?,?)"; (2) $motifCounts{$nextMotif}++; (3) fit4 <- rpart(tempHyper ~ . , data=newpct4mer, method="class",control=rpart.control)

  8. . . .

  9. play

  10. . . .

  11. … … … … …

  12. . . .

  13. . . .

  14. . . . . . . . . .

  15. References Chargaff, E. 1963. Essays on Nucleic Acids. Elsevier, New York, NY. Dyer, B.D., Kahn, M.J., and LeBlanc, M.D. (2007). Classification and Regression Tree (CART) analyses of genomic signatures reveal sets of tetramers that discriminate temperature optima of Archaea and Bacteria. Archaea, v2(3). LeBlanc, M.D. and Dyer, B.D. (2007). Perl for Exploring DNA. Oxford University Press. Paydarfar, D. and Schwartz, W.J. (2001). Science 6 April 2001:
Vol. 292. no. 5514, p. 13.

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