1 / 10

Slicer 3.0: Advanced Architecture for Interactive and Batch Processing

Slicer 3.0 offers a robust architecture designed for both interactive and batch processing through its well-structured modules. Each module is accessible via the module menu and features user interface controls tailored to enhance usability. The platform supports various algorithms, including ITK and VTK, and offers command line modules for operations such as image registration, filtering, and DTI tractography. With over 3,400 commits and 371,000 lines of code, Slicer 3.0 stands as a comprehensive tool for medical imaging and data analysis.

pierce
Télécharger la présentation

Slicer 3.0: Advanced Architecture for Interactive and Batch Processing

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Slicer3 plugins Common architecture for interactive and batch processing

  2. Each module has … … an entry in the module menu … a panel of user interface controls

  3. User Desktop Slicer3.0 Algorithms ITK VTK Slicer Modules Scripts of Slicer Mods VTK Apps Using ITK Batch Programs Non-NAMIC Cmd tools BatchMake BIRN Grid Wizard The grand vision…

  4. Slicer Development Effort Numbers Subversion Commits: 3,407 Lines of Code*: 371,428 Bugs & Features: 154 Submitted 63 Closed Active Developers†: 33 *: find . -iname \*.h -o -iname \*.cxx -o -iname \*.tcl -o -iname \*.java -o -name \*.py | grep -v svn | xargs wc †: svn log | grep "^r" | cut -d " " -f 3 | sort | uniq | wc

  5. User Desktop Slicer3.0 Algorithms ITK VTK Slicer Modules Scripts of Slicer Mods VTK Apps Using ITK Batch Programs Non-NAMIC Cmd tools BatchMake BIRN Grid Wizard Common architecture for interactive and batch processing

  6. Slicer Modules Built In Modules Interact Closely with GUI Volume Rendering, Models, Editor… Command Line Modules “Batch Mode” Registration, Filtering, DTI Tractography… Today we will look only at Command Line Modules

  7. Existing Command Line Modules Demonstration Execution Model Tour Your new hello world module Converters Create a DICOM Series Dicom DWI loader Dicom to Nrrd GE Dicom to NRRD Converter Orient Images Filtering Calculate Volume Statistics CheckerBoard Filter Extract Skeleton Histogram Matching Otsu Threshold Resample Volume / Resample Volume 2 Voting Binary Hole Filling Zero Crossing Based Edge Detection Filter Filtering.Arithmetic: Add Images Subtract Images

  8. Existing Command Line Modules Filtering.Denoising Curvature Anisotropic Diffusion Gaussian Blur Gradient Anisotropic Diffusion Median Filter Segmentation EMSegment Simple FreesurferSurfaceSectionExtraction Otsu Threshold Segmentation Simple region growing Filtering.Morphology Grayscale Fill Hole Grayscale Grind Peak Model Generation Grayscale Model Maker Label Map Smoothing Model Maker Multiple models example Probe Volume With Model (Paint) Meshing.VoxelMesh Voxel Meshing

  9. Registration Command Line Modules Registration Affine registration Deformable BSpline registration (Utah) Deformable BSpline registration Linear registration RealignVolume

  10. Diffusion Command Line Modules Diffusion Tensor Resample DTI Volume Diffusion Tensor Estimation Diffusion Tensor Scalar Measurements Simple DWI IO Test Rician LMMSE Image Filter Tractography.Editor: ROISelect Tractography.Seeding Stochastic Tractography Generate Connectivity Map Stochastic ROI Tract Filter Stochastic Stochastic Tractography Filter

More Related