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Summary from Last Class

Summary from Last Class. Introduction to CIDER Opt Out Security and Auditing User responsibilities Definition of Project Data privileges Process workflows – user activation & project creation Session Timeout . Quiz Results. Review Quiz. Q-1

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Summary from Last Class

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Presentation Transcript

  1. Summary from Last Class • Introduction to CIDER • Opt Out • Security and Auditing • User responsibilities • Definition of Project • Data privileges • Process workflows – user activation & project creation • Session Timeout

  2. Quiz Results

  3. Review Quiz • Q-1 • What trainings are mandatory for a user to activate his/her user account in CIDER? • Q-4 • As a Washington University user, what should you do in the event of you losing OR compromising the downloaded data from CIDER? • Q-8 • A user can query and view clinical data without using a project. - True/ False

  4. Agenda for Today • Introduction to Menus • Introduction to Dashboard • Introduction to Vocabulary Interface • Types of Queries in CIDER • Use of shared and parameterized query • CIDER Application demo • Hands on Lab • Quiz • Q&A

  5. Dashboard • Dashboard is the page on which users would be taken to upon successful login • All items available to user are organized on this page under the Explorer • Can filter/search for a particular item • Can customize number of records per page • Pagination enabled at the top

  6. Dashboard Dashboard

  7. Vocabulary Interface • BJC uses a custom coding system based on SNOMED 1993 • It is called MED – Medical Entities Dictionary • Vocabulary Interface establishes the mapping b/w standard vocabularies • Permissible values can be searched and selected while forming queries • The lab unit of measure, lab specimen type and number of occurrences next to the codes

  8. Vocabulary Interface Vocabulary Interface

  9. Vocabulary Interface Demo • Provides Permissible Values (PVs) for clinical variables in • Demographics • Visits • Lab Tests • Medications • Documents

  10. Demographics • Gender • Ethnic Origin • Race       

  11. Visits • Patient Type • Discharge Service • Admitting Service • Facility • Procedure Code • Diagnosis Code

  12. Lab Tests • Specimen Type • Laboratory Procedure Type • Facility • Laboratory Test Type

  13. Medications • Medication • Medication Order Route • Medication Component Route • Medication Component Type • Frequency

  14. Documents • Document – can do ‘google like’ search • Document Name (Type) • Facility  

  15. Introduction to Queries • Two types • Discover patient cohorts • Obtain patient data

  16. How to use Shared Queries • Shared and Parameterized Queries • Introduction • Selecting permissible values • Adding permissible values • Run query interactively or in background • History available under Recent Queries

  17. Application Demo • Find patients with a particular Diagnosis • Find patients with a particular Procedure • Find patients having a Lab Test done • Find patients who had taken a particular Medication

  18. Hands on Lab-2 Use queries from Shared Queries to find out the following for an unspecified project: • Find the number of patients with Type-2 Diabetes • Find the number of patients with Hypertrophic Cardiomyopathy (HCM) • Find number of patients with elevated levels of Troponin ( level > 0.2 nanograms per milliliter )

  19. Quiz-2 • Please write your First name and Last Name on the quiz answer sheet to get proper credit • Please circle the best answer choice for each question • Please turn in the completed assignments to me before the end of the class • We will go over the answers and you will get your answer papers graded in the next class

  20. Take Home Assignment • Identify whether there are enough patients to conduct a study for your project and report the results by next class OR • Find the number of patients over the age 40 with breast cancer diagnosed. Breast Cancer ICD-9 codes are as follows. [ICD-9 = 174 ->174.9 and ICD-9 = 233.0) AND • Review CIDER help pages for Lab-3 • Working with Workflows http://wikip2m1.cbmi.wucon.wustl.edu/ciderwiki/

  21. Appendix CIDER Screen shots

  22. Menu Options My Dashboard My Profile

  23. Menu Options • Search • New Search • Get Count • - Workflow

  24. Menu Options My Projects My Queries My Workflows Approve User Request

  25. Dashboard • Components of Dashboard • Projects

  26. Projects My Projects View Project

  27. View Project Back to Project List

  28. Dashboard • Introduction to Dashboard • Projects • Queries • Recent Queries • My Queries • Shared Queries

  29. Recent Queries Counts Run status Completed Failed View Parameters

  30. View Parameters under Recent Queries Query Parameters

  31. My Queries # of Queries Query Type Edit Query Query Title Execute Query

  32. Shared Queries Edit Query Execute Query

  33. Dashboard • Introduction to Dashboard • Projects • Queries • Workflows

  34. Workflows Workflows

  35. Dashboard • Introduction to Dashboard • Projects • Queries • Workflow • Message Board

  36. Q & A • Please feel free to contact me at any time • Email: bgeorge@wustl.edu

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