'Backbone alignment' diaporamas de présentation

Family of HMMs

Family of HMMs. Nam Nguyen University of Texas at Austin. Outline of Talk. Background Family of HMMs Model Alignment algorithm Applications of fHMM SEPP (Mirarab, Nguyen, and Warnow. PSB 2012) TIPP (Nguyen, et al. Under review) Conclusions and future work. Phylogenetics.

1.34k views • 116 slides

Using Ensembles of Hidden Markov Models for Grand Challenges in Bioinformatics

Using Ensembles of Hidden Markov Models for Grand Challenges in Bioinformatics. Tandy Warnow Department of Computer Science The University of Illinois at Urbana-Champaign. Four Problems. Phylogenetic Placement Multiple sequence alignment Metagenomic taxon identification

682 views • 68 slides

TIPP and SEPP: Metagenomic Analysis using Phylogeny-Aware Profiles

TIPP and SEPP: Metagenomic Analysis using Phylogeny-Aware Profiles. Tandy Warnow and Erin Molloy Department of Computer Science The University of Illinois at Urbana-Champaign. Metagenomic taxonomic identification and phylogenetic profiling.

661 views • 65 slides

SEPP and TIPP for metagenomic analysis

SEPP and TIPP for metagenomic analysis. Tandy Warnow Department of Computer Science University of Texas. Metagenomics: Venter et al., Exploring the Sargasso Sea: Scientists Discover One Million New Genes in Ocean Microbes. Computational Phylogenetics and Metagenomics.

705 views • 61 slides

SEPP and TIPP for metagenomic analysis

SEPP and TIPP for metagenomic analysis. Tandy Warnow Department of Computer Science University of Texas. Phylogeny (evolutionary tree). Orangutan. Human. Gorilla. Chimpanzee. From the Tree of the Life Website, University of Arizona. How did life evolve on earth?.

734 views • 60 slides

Estimating Ultra-large Phylogenies and Alignments

Estimating Ultra-large Phylogenies and Alignments. Tandy Warnow Department of Computer Science The University of Texas at Austin. How did life evolve on earth?. Courtesy of the Tree of Life project. NP-hard optimization problems Stochastic models of evolution Statistical methods

712 views • 60 slides

559 views • 44 slides