'Consensus sequences' diaporamas de présentation

Biological Motif Discovery

Biological Motif Discovery. Concepts Motif Modeling and Motif Information EM and Gibbs Sampling Comparative Motif Prediction Applications Transcription Factor Binding Site Prediction Epitope Prediction Lab Practical DNA Motif Discovery with MEME and AlignAce

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Transcription

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Protein Synthesis

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Introduction

Introduction. Day 1: Introduction Day 2: Sequence Analysis Day 3: Databases Day 3: Dynamic Programming mario@sanbi.ac.za. Goals of Bioinformatics. Understand living cells and how they function on a molecular level Done by analysing molecular sequence and structural data

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Fig. 10-1

Chapter 10: transcriptional regulation. Fig. 10-1. Regulation of Gene Transcription DNA-binding proteins RNA polymerase binding to the transcription initiation site ( e.g., promoter ) Regulatory protein(s) binding to other sites ( e.g., operator )

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Transcription

Transcription. Introduction. Coding strand: identical in sequence with RNA Template strand: used as template for RNA synthesis Complimentary to RNA. Figure 11.1. 11.1 Introduction. RNA polymerase Promoter: a special region containing startpoint Terminator

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Saliya ekanayake

Study of Biological Sequence Structure: Clustering and Visualization & Survey on High Productivity Computing Systems (HPCS) Languages. Saliya ekanayake. School of Informatics and Computing Indiana University. Study of Biological Sequence Structure: Clustering and Visualization.

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Gene Structure and Identification

Gene Structure and Identification. Eukaryotic Genes and Genomes Gene Finding. Previous reading: 1.3, 9.1-9.6 Reading: 10.2, 10.4, 10.6-8. BIO520 Bioinformatics Jim Lund. ~10% highly repetitive (300 Mbp) NOT GENES ~25% moderate repetitive (750 Mbp) Some genes

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Genome Annotation

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Jiajian Liu and Gary D. Stormo Presented by Aliya Sadeque

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Announcements

Announcements. Specifics on reading assignments: Ch. 11 : Skip, p. 304, btm. 309- top 312; Ch. 12 : skim 327-328; skip btm 335-336; skip recombination on 338-341; Ch. 13 : skim btm 353-354; 358-top 360; skip splicing mechanism, editing, and EM (367-370).

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Brown Algal Diversity in Bermuda Revealed using Molecular Tools

Brown Algal Diversity in Bermuda Revealed using Molecular Tools. Honors Project May 2, 2013 By: Alyssa Rogers Mentor: Dr. Christopher Lane. A Brief Introduction to the Bermuda Seaweed Project. Crypsis : Convergent Morphologies.

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Information Management Infrastructure for the Systematic Annotation of Vertebrate Genomes

Information Management Infrastructure for the Systematic Annotation of Vertebrate Genomes.

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Transcription

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Promoters

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CISC 841 Bioinformatics (Fall 2007) Hidden Markov Models

CISC 841 Bioinformatics (Fall 2007) Hidden Markov Models. Model comparison. How to tell if two HMMs are equivalent? If not equivalent, how (dis-)similar are they? Remember: HMMs are generative Given a sequence x, P(x|M) is the probability that x can be generated from the model M.

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CISC 841 Bioinformatics (Fall 2008) Hidden Markov Models

CISC 841 Bioinformatics (Fall 2008) Hidden Markov Models. Model comparison. How to tell if two HMMs are equivalent? If not equivalent, how (dis-)similar are they? Remember: HMMs are generative Given a sequence x, P(x|M) is the probability that x can be generated from the model M.

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Manual Annotation of the human and mouse gene index: allgenes

Manual Annotation of the human and mouse gene index: www.allgenes.org. Allgenes.org. A web interface providing access to the assembled EST and mRNA sequences, or DoTS RNA transcripts, contained within GUS (Genomics Unified Schema), a relational database.

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Additional File 5. Consensus sequences for additional motifs found in sacred lotus bHLH proteins

Additional File 5. Consensus sequences for additional motifs found in sacred lotus bHLH proteins. 1. 16. 2. 17. 3. 18. 4. 19. 5. 20. 6. 21. 7. 22. 8. 23. 9. Basic leucine zipper motif 2. 24. 10. 25. 11. 26. 12. 27. ACT domain 3. 13. 28. 14. References:

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