'Entrez gene' diaporamas de présentation

SNP Resources: Finding SNPs Databases and Data Extraction

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Informatics for Molecular Biologists

Informatics for Molecular Biologists. Ansuman Chattopadhyay,PhD Head, Molecular Biology Information Service Falk Library, Health Sciences Library System University of Pittsburgh. Molecular Biology Information Service. Falk Library of Health Sciences Health Sciences Library System

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Introduction to Bioinformatics Databases

Introduction to Bioinformatics Databases. Central dogma of molecular biology. DNA. RNA. protein. phenotype. A main focus of bioinformatics is to study molecular sequence data to gain insight into a broad range of biological problems. Page 6. After Pace NR (1997) Science 276:734.

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Li-San Wang Penn Center for Bioinformatics University of Pennsylvania lswang@maild.upenn

Introduction to NCBI (and Other Online Bioinformatics Resources) Society for Developmental Biology 2008. Li-San Wang Penn Center for Bioinformatics University of Pennsylvania lswang@mail.med.upenn.edu http://people.pcbi.upenn.edu/~lswang/. Outline.

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BridgeDb

BridgeDb. Martijn van Iersel BiGCaT Maastricht. The 7 Virtues of Bioinformatics. Solve a problem Start small Modularity Design for code re-use Open Source Attention to detail Eat your own dog-food. Solve a problem. What problem are you solving?. Problem: Identifier Mapping.

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Doug Brutlag Professor Emeritus Biochemistry & Medicine (by courtesy)

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Canadian Bioinformatics Workshops

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PATHWAY ANALYSIS

PATHWAY ANALYSIS. Susan LM Coort, PhD Department of Bioinformatics, Maastricht University susan.coort@maastrichtuniversity.nl. Data analysis overview. Slide based on a slide from J. Pennings, RIVM, NL. Microarray scans. Image analysis. Arrayanalysis.org. Raw data. Quality control

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Introduction to Bioinformatics Introduction to Databases

Introduction to Bioinformatics Introduction to Databases. What are the goals of the course?. To provide an introduction to bioinformatics with a focus on the National Center for Biotechnology Information (NCBI), UCSC, and EBI To focus on the analysis of DNA, RNA and proteins

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NCBI Molecular Biology Resources

NCBI Molecular Biology Resources. Sequin BankIt WebIn SAKURA. Entrez. Submissions Updates. Submissions Updates. Submissions Updates. SRS. getentry. The International Sequence Database Collaboration. NIH. NCBI. GenBank. EMBL. DDBJ. EBI. CIB. NIG. EMBL.

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Web site for step-by-step Instructions

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RDB2RDF: Incorporating Domain Semantics in Structured Data

RDB2RDF: Incorporating Domain Semantics in Structured Data. Satya S. Sahoo Kno.e.sis Center , Computer Science and Engineering Department, Wright State University, Dayton, OH, USA. Acknowledgements. Dr. Olivier Bodenreider (U.S NLM, NIH)

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Nucleotide Databases: Genbank

Nucleotide Databases: Genbank. Dr Maha Al- Sulaimani Department of Biochemistry. Learning Objectives. Understand what a nucleotide database is. Distinguish the structure of eukaryotic and prokaryotic genes. Make sense of a GenBank entry.

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Human and Mouse Orthologous Transcript Nomenclature Meeting April 22, 2005

The Jackson Laboratory. Human and Mouse Orthologous Transcript Nomenclature Meeting April 22, 2005. Lois J. Maltais Mouse Genome Informatics (MGI) The Jackson Laboratory Bar Harbor, ME. Mouse Genomic Nomenclature Committee (MGNC )

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PubMed Advanced: Linking PubMed to NCBI Genetics Databases

PubMed Advanced: Linking PubMed to NCBI Genetics Databases. KTL Vaughan Librarian for Bioinformatics & Pharmacy UNC-CH Health Sciences Library. Welcome!. K.T. Vaughan, instructor Nani Vaidhyanathan, assistant Topics: Searching PubMed for genes (keyword and MeSH)

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Exercise session 1

Exercise session 1. Exercise 1 OMIM: identify disease related genes. Tasks: choose a gene and identify terms that characterize it. some examples: Alzheimer, breast cancer What human genes are related to hypertension?

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Exercise 1

Exercise 1. Database searches. Tasks of the day. Learn to use NCBI ENTREZ ( gquery ) PubMed Biomedical literature PMC PMC is a free full-text archive of biomedical and life sciences journal literature at the PopSet. Tasks of the day. OMIM UniGene Homologene Entrez Gene.

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URI

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( )

(a). Entrez Gene. seq. SOURCE 0. NetAffx. GO. NetAffx. InterPro. SOURCE 1. probe. GO. seq. probe. SwissProt. seq. GOA. SwissProt. NetAffx. KW. probe. seq. KW2GO. SOURCE 0,1,2. GO. SOURCE 2. GO. GO. SwissProt. MEDLINE. NetAffx. SOURCE 3. MeSH2GO. MeSH. probe. pub.

107 views • 1 slides