'Exact matches' diaporamas de présentation

NGS Day 3

1.3k views • 86 slides

Lecture 3. Heuristic Sequence Alignment

Lecture 3. Heuristic Sequence Alignment. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. Computational complexity of optimal alignment problems Heuristic methods Dot plot Pairwise sequence alignment: FASTA The FASTA file format BLAST

695 views • 69 slides

Lecture 3. Heuristic Sequence Alignment

Lecture 3. Heuristic Sequence Alignment. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. Computational complexity of optimal alignment problems Heuristic methods Dot plot Pairwise sequence alignment: FASTA The FASTA file format BLAST

1.19k views • 68 slides

Searching Molecular Databases with BLAST

Searching Molecular Databases with BLAST. Searching Molecular Databases with BLAST. B asic L ocal A lignment S earch T ool How BLAST works Interpreting search results The NCBI Web BLAST interface Demonstration and exercises. Why learn sequence database searching?. What have I cloned ?

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Chaps. 12 & 13: Multiple Sequence Alignment

Chaps. 12 & 13: Multiple Sequence Alignment. Pairwise Alignment Dynamic Programming Multi-sequence Alignment FASTA (Fast Alignment) BLAST (Basic Local Alignment Search Tool). FASTA. Pearson and Lipman, 1988, Fast Alignment http://www.ebi.ac.uk/Tools/sss/fasta/ Steps

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Pairwise Sequence Alignment Part 2

Pairwise Sequence Alignment Part 2. Outline. Global alignments-continuation Local versus Global BLAST algorithms Evaluating significance of alignments. Global Alignment -Cont. Needleman-Wunsch Alignment. Global alignment between sequences Compare entire sequence against another

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Chapter Five

Chapter Five. Selection and Repetition. Objectives. How to make decisions using the if statement How to make decisions using the if-else statement How to use compound expressions in if statements How to make decisions using the switch statement How to use the conditional operator.

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Merging Criminal History and Corrections Records for Prospective and Retrospective Analyses

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BLAST and Multiple Sequence Alignment

BLAST and Multiple Sequence Alignment. Announcements Quiz #3 on Thurs., May 17 on lectures presented April 26, May 3 and May 15 Writing assignments due May 24 at the beginning of class. Learning objectives-Learn the basics of BLAST and Psi-BLAST and CLUSTAL W

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Using the Net to Analyze Food Intake

Using the Net to Analyze Food Intake.

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Bioinformatics Tutorial I BLAST and Sequence Alignment

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POETRY

POETRY. EXPRESS YOURSELF!. RHYME SCHEME. Some poems rhyme and some do not! Poems that do not have a rhyme scheme are called free verse .

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Faster finds from Gallo to Google

Faster finds from Gallo to Google. Presented to the Niagara University Bioinformatics Seminar Dr. Laurence Boxer Department of Computer and Information Sciences. Applications to string search problems from:

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CS 430: Information Discovery

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SPS Contacts

SPS Contacts. Joan Hauser | Member Solutions Representative Shared Purchasing Solutions | Amerinet 2635 Hemstock St | La Crosse, WI 54603 TF 800.657.4445 | C 608.385.2449 F 608.781.4412 hauserj@sps-gpo.com. Sue Heilman | Member Coordinator

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Heuristic homology search methods

Heuristic homology search methods. Heuristic methods. Heuristic methods make 'reasonable assumptions' about the nature of the sequence alignments. This allows them to cut corners by trying out only the most likely alignments. The benefit is that they run MUCH faster than an exhaustive search.

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Personality PowerPoint

Personality PowerPoint. 4 slides and no more than 6 include 1 st slide- your name, class period and what your 4 letters were from the personality quiz Describe personality- what the letters stand for and what they mean How it relates to you as a person

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Protein Domain Finding Problem

Biological Background

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tpollo@wustl Beginning Spellers Exploit Inexact Letter - Name Matches

tpollo@wustl.edu Beginning Spellers Exploit Inexact Letter - Name Matches Tatiana Cury Pollo, Rebecca Treiman, & Brett Kessler. Abstract

89 views • 1 slides