'Gene list' diaporamas de présentation

MetaCore data analysis suite and functional analysis

MetaCore data analysis suite and functional analysis. Ying-Fan Chen, Ph. D. Feb. 5, 2010. Outline. Introduction. ?????????????????????. ?????? ?. Upload Data. ? Analyze Data. ? ?? workflow. ? MapEditor. ????. ? ????. Outline. Introduction. ?????????????????????. ?????? ?.

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Canadian Bioinformatics Workshops

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Chapter 8: Biological Knowledge Assembly and Interpretation

Chapter 8: Biological Knowledge Assembly and Interpretation . Ju Han Kim Division of Biomedical Informatics, Seoul National University College of Medicine, Seoul, Korea, Presenter: Zhen Gao . Outline. Review of major computational approaches to facilitate biological interpretation of

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Canadian Bioinformatics Workshops

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ArrayTrack 3.4.0 Demonstration

ArrayTrack 3.4.0 Demonstration. National Center for Toxicological Research U.S. Food and Drug Administration 3900 NCTR Road, Jefferson, AR 72079. ArrayTrack Overview. Microarray DB Library Tool. An integrated environment for microarray data management,

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DAVID slides May 2014 version 5. Appendix Edited and expanded subset of slides on DAVID * (NIAID) from the class:.

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Relating Gene Expression to a Phenotype and External Biological Information

Relating Gene Expression to a Phenotype and External Biological Information. Richard Simon, D.Sc. Chief, Biometric Research Branch, NCI http://linus.nci.nih.gov/brb. Good Microarray Studies Have Clear Objectives. Gene Finding Class Comparison

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Functional Enrichment Analysis :

Introduction to Systems Biology 2012. Functional Enrichment Analysis :. making sense of big data. Aaron Brooks & Fang Yin Lo 8/21/2012. Insight. Experimental Design. Data analysis. Data collection. Mischel et al, 2004. From knots to knowledge. What is functional enrichment?

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EPConDB

EPConDB. A web resource of the Beta Cell Biology Consortium. http://www.cbil.upenn.edu/EPConDB. Introduction. The EPConDB website provides an integrated view of pancreas- and islet-related gene annotation, expression and regulation data. Data in EPConDB Browsing Individual Genes

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Considering positional bias in regulatory motifs of genes associated with breast cancer

Considering positional bias in regulatory motifs of genes associated with breast cancer. Nathaniel Gustafson Dr. Garry Larson (City of Hope). Cancer Studies. Can we tie genetic variation ( eg . SNPs) to Cancer Risk? Myriad Genetics found BrCa1 and BrCa2

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A Statistical Approach to Literature-based Gene Group Annotation

A Statistical Approach to Literature-based Gene Group Annotation. Xin He 01/31/2007. Annotating a Gene List. Goal: understand the commonalities in a list of genes from: Clustering by expression patterns Differentially expressed genes Genes sharing cis-regulatory elements

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Canadian Bioinformatics Workshops

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SNP@Promoter : A database of Human SNPs (Single Nucleotide Polymorphisms) within putative promoter region

SNP@Promoter : A database of Human SNPs (Single Nucleotide Polymorphisms) within putative promoter region. Korea BioInformation Center Byoung-Chul Kim. Korean Bioinformation Center (KOBIC). The national bioinformatics center of Korea

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EGAN tutorial: Loading experiment results

EGAN tutorial: Loading experiment results. October, 2009 Jesse Paquette UCSF Helen Diller Family Comprehensive Cancer Center jesse.paquette@cc.ucsf.edu. Preamble. This document has many slides with multi-step animations Best viewed in Slide Show mode

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Visualization tool for data analysis

Visualization tool for data analysis. Uma Chandran, PhD Department of Biomedical Informatics 1/11/2013. Research Questions. Gene expression signatures of estrogen response in breast versus bone versus endometrium

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CELs

Exon-level Analysis. Gene-level Analysis. CELs. Meta- probeset. iterPLIER. PLIER. DABG. Gene signal. Exon signal. PCA, ANOVA. Filter outliers. Filter outliers. Gene signal. Exon signal. Exon p-values. Filter gene expression. Filter exon expression. Gene signal.

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