'Kmp algorithm' diaporamas de présentation

CS5263 Bioinformatics

CS5263 Bioinformatics. Lecture 9-10 Exact String Matching Algorithms. Overview. Pair-wise alignment Multiple alignment Commonality: allowing errors when comparing strings Two sub-problems: How to score an alignment with errors How to find an alignment with the best score

988 views • 98 slides

CS 5263 Bioinformatics

CS 5263 Bioinformatics. Exact String Matching Algorithms. Overview. Sequence alignment: t wo sub-problems: How to score an alignment with errors How to find an alignment with the best score Today: exact string matching Does not allow any errors Efficiency becomes the sole consideration

917 views • 91 slides

CS 6293 Advanced Topics: Current Bioinformatics

CS 6293 Advanced Topics: Current Bioinformatics. Lecture 5 Exact String Matching Algorithms. Overview. Sequence alignment: t wo sub-problems: How to score an alignment with errors How to find an alignment with the best score Today: exact string matching Does not allow any errors

1.05k views • 90 slides

CS 5263 & CS 4233 Bioinformatics

CS 5263 & CS 4233 Bioinformatics. Exact String Matching Algorithms. Overview. Sequence alignment: t wo sub-problems: How to score an alignment with errors How to find an alignment with the best score Today: exact string matching Does not allow any errors

740 views • 73 slides

Morris-Pratt Algorithm

Morris-Pratt Algorithm. A linear pattern-matching algorithm , Technical Report 40, University of California, Berkeley, 1970. Advisor: Prof. R. C. T. Lee Speaker: C. W. Lu. Morris (Jr), J. H. , Pratt, V. R. Morris-Pratt algorithm.

658 views • 42 slides

Bioinformatics Algorithms and Data Structures

Bioinformatics Algorithms and Data Structures. Chapter 2: KMP Algorithm Lecturer: Dr. Rose Slides by: Dr. Rose January 30, 2007. KMP Algorithm. Preliminaries: KMP can be easily explained in terms of finite state machines. KMP has a easily proved linear bound

438 views • 27 slides

Bioinformatics Algorithms and Data Structures

Bioinformatics Algorithms and Data Structures. Chapter 2: KMP Algorithm Lecturer: Dr. Rose Slides by: Dr. Rose January 28, 2003. KMP Algorithm. Preliminaries: KMP can be easily explained in terms of finite state machines. KMP has a easily proved linear bound

401 views • 27 slides

Average Case Analysis of an Exact String Matching Algorithm

Average Case Analysis of an Exact String Matching Algorithm. Advisor : Professor R. C. T. Lee Speaker : S. C. Chen. Problem Definition.

390 views • 22 slides

Pattern Matching

411 views • 14 slides

Knuth-Morris-Pratt

Knuth-Morris-Pratt. KMP algorithm. [over binary alphabet] Build DFA from pattern. Run DFA on text. Search Text. a. a. a. b. a. a. b. a. a. a. b. a. a. b. a. a. a. b. a. a. a. a. a. b. a. b. 0. 1. 3. 4. 2. 5. 6. accept state. b. b. b.

309 views • 12 slides

Knuth-Morris-Pratt

Knuth-Morris-Pratt. KMP algorithm. [over binary alphabet] Build DFA from pattern. Run DFA on text. Search Text. a. a. a. b. a. a. b. a. a. a. b. a. a. b. a. a. a. b. a. a. a. a. a. b. a. b. 0. 1. 3. 4. 2. 5. 6. accept state. b. b. b.

209 views • 12 slides

Knuth-Morris-Pratt

Knuth-Morris-Pratt. KMP algorithm. [over binary alphabet] Build DFA from pattern. Run DFA on text. Search Text. a. a. a. b. a. a. b. a. a. a. b. a. a. b. a. a. a. b. a. a. a. a. a. b. a. b. 0. 1. 3. 4. 2. 5. 6. accept state. b. b. b.

194 views • 12 slides