'Longest common subsequence' diaporamas de présentation

Next Generation Sequencing

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Longest common subsequence

Longest common subsequence. INPUT: two strings OUTPUT: longest common subsequence. ACTGAACTCTGTGCACT TGACTCAGCACAAAAAC. Longest common subsequence. INPUT: two strings OUTPUT: longest common subsequence. AC TGA A CTC T G TG CAC T TGACTC A GCAC AAAAAC. Longest common subsequence.

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Algorithm Design and Analysis (ADA)

Algorithm Design and Analysis (ADA). 242-535 , Semester 1 2013-2014. Objective introduce DP, its two hallmarks, and two major programming techniques look at two examples: the fibonacci series and LCS. 7. Dynamic Programming. Overview. Dynamic Programming ( DP ) Fibonacci Series

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Dynamic Programming

Dynamic Programming. Dynamic Programming. Dividing a problem into subproblems Dynamic programming vs divide and conquer - Dynamic programming : subproblems are overlapped - Divide and conquer : subproblems are independent Used for finding optimized solutions.

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Lecture 8: Dynamic Programming

Lecture 8: Dynamic Programming. Shang-Hua Teng. Longest Common Subsequence. Biologists need to measure how similar strands of DNA are to determine how closely related an organism is to another.

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CSEP 521 Applied Algorithms

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Sequence Alignment

Sequence Alignment. Outline. Global Alignment Scoring Matrices Local Alignment Alignment with Affine Gap Penalties. From LCS to Alignment: Change up the Scoring.

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Chapter 7

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Dynamic Programming

Dynamic Programming. Longest Common Subsequence. Problem: Given 2 sequences, X = ? x 1 ,...,x m ? and Y = ? y 1 ,...,y n ? , find a common subsequence whose length is maximum. springtime ncaa tournament basketball printing north carolina krzyzewski

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Pairwise Sequence Alignment (I)

Pairwise Sequence Alignment (I). (Lecture for CS498-CXZ Algorithms in Bioinformatics) Sept. 22, 2005 ChengXiang Zhai Department of Computer Science University of Illinois, Urbana-Champaign. Many slides are taken/adapted from http://www.bioalgorithms.info/slides.htm.

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Dynamic Programming

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6.006- Introduction to Algorithms

6.006- Introduction to Algorithms. Lecture 19 Prof. Constantinos Daskalakis. Lecture overview. review of last lecture key aspects of Dynamic Programming (DP) all-pairs shortest paths as a DP a smarter DP for all-pairs shortest paths longest common subsequence.

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Introduction

Introduction. Text main form of communicating knowledge. Document loosely defined, denote a single unit of information. can be any physical unit a file an email a Web Page. Introduction. Document Syntax and structure Semantics Information about itself. Introduction. Document Syntax

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Pairwise Alignment, Part I

Pairwise Alignment, Part I. Constructing the Values and Directions Tables from 2 related DNA (or Protein) Sequences. Pairwise Alignment of DNA (or Amino Acid) Sequences.

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Bioinformatics

Bioinformatics. Sean Langford, Larry Hale. What is it?.

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Dynamic Programming From An Excel Perspective

Dynamic Programming From An Excel Perspective. Dynamic Programming From An Excel Perspective. Dynamic Programming From An Excel Perspective Ranette Halverson, Richard Simpson Catherine Stringfellow Department of Computer Science Midwestern State University.

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Review for Midterm Exam

Review for Midterm Exam. Andreas Klappenecker. Topics Covered. Finding Primes in the Digits of Euler's Number Asymptotic Notations: Big Oh, Big Omega, Big Theta Greedy Algorithms Matroids, Matroid Embeddings Dynamic Programming, Amortized Analysis Divide-and-Conquer Disjoint Sets

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Longest Common Subsequence

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Distance Functions for Polygons/Trajectories

Distance Functions for Polygons/Trajectories. Chun- Sheng & Vadeerat 10/09/2009. Type of Distance Function for Polygons/Trajectories. Similarity Measurement Focus on the similarity of shapes Remedy for Scaling Rotation Alignment

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