Motif detection - PowerPoint PPT Presentation

Advanced Algorithms and Models for Computational Biology -- a machine learning approach

Advanced Algorithms and Models for Computational Biology -- a machine learning approach. Computational Genomics III: Motif Detection Eric Xing Lecture 6, February 6, 2005. Reading: Chap. 9, DTW book. Motifs - Sites - Signals - Domains.

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Motif detection and Screening

Motif detection and Screening. 09112006. OVERVIEW. Sequence. Blast. Identify homologs. INCLUsive. Select Intergenics. Motif Sampler/ RSA. Phylogenetic footprinting. Motif Scanner/ RSA. Genome wide screening. SELECTION INTERGENIC SEQUENCES. SELECTION INTERGENIC SEQUENCES.

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Phylogenetic Models for Motif Detection

Phylogenetic Models for Motif Detection. Pradipta Ray ( joint work advised by Eric Xing ). What. Repeating, roughly conserved genetic sequence of biological sequence “Pure” pattern matching techniques give you a large number of false matches : low precision Best modelled as semi supervised.

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