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Comprehensive Motif Detection and Screening Techniques for Intergenic Sequences

This overview details advanced techniques in motif detection and screening of intergenic sequences using tools like Sequence Blast and Gibbs Motif Detection. The methodologies outlined include phylogenetic footprinting and motif scanning through genome-wide screening approaches. The insights provided aim to assist researchers in identifying homologs inclusively and understanding the regulatory frameworks governing gene expressions, particularly in relation to specific motifs. Additional focus is on regulatory genes such as cydA and yejG as examples of motif relevance.

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Comprehensive Motif Detection and Screening Techniques for Intergenic Sequences

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  1. Motif detection and Screening 09112006

  2. OVERVIEW Sequence Blast Identify homologs INCLUsive Select Intergenics Motif Sampler/ RSA Phylogenetic footprinting Motif Scanner/ RSA Genome wide screening

  3. SELECTION INTERGENIC SEQUENCES

  4. SELECTION INTERGENIC SEQUENCES

  5. SELECTION INTERGENIC SEQUENCES

  6. Motif Detection

  7. OVERVIEW Sequence Blast Identify homologs INCLUsive Select Intergenics Motif Sampler/ RSA Phylogenetic footprinting Motif Scanner/ RSA Genome wide screening

  8. Motif Detection: Gibbs

  9. Motif Detection: Gibbs

  10. Motif Detection: Gibbs

  11. Motif Detection: Gibbs Consensus: TTGATCTAGATCAA Regular expression

  12. Motif Detection: RSA

  13. Motif Detection: RSA

  14. Motif Detection: RSA

  15. Motif Detection: RSA

  16. Motif Detection: RSA

  17. OVERVIEW Sequence Blast Identify homologs INCLUsive Select Intergenics Motif Sampler/ RSA Phylogenetic footprinting Motif Scanner/ RSA Genome wide screening

  18. CONSENSUS

  19. CONSENSUS

  20. REGULAR EXPRESSION

  21. MotifScanner

  22. MotifScanner score consensus hit start stop

  23. EcoCYC

  24. EcoCYC cydA encodes a terminal oxidase Its regulation by FNR was to be expected

  25. EcoCYC yejG is a novel protein with unknown function But from in silico analysis you know it might be regulated by O2

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