'Quality scores' diaporamas de présentation

Introduction to NGS

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Team Driven Tertiary Process: The Prevent-Teach-Reinforce Model

Team Driven Tertiary Process: The Prevent-Teach-Reinforce Model . Rose Iovannone, Ph.D. iovannone@fmhi.usf.edu Carie English, Ph.D. cenglish@fmhi.usf.edu University of South Florida. USF Don Kincaid Kathy Christiansen Sarah Donadio Glen Dunlap. UCD Kelly Wilson Patricia Oliver

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ChIP Sequencing BMI/IBGP 730

ChIP Sequencing BMI/IBGP 730. Victor Jin, Ph.D. (Slides from Dr. H. Gulcin Ozer) Department of Biomedical Informatics. What is ChIP-Sequencing?. ChIP-Sequencing is a new frontier technology to analyze protein interactions with DNA. ChIP-Seq

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De novo assembly of RNA

De novo assembly of RNA. Steve Kelly www.stevekelly.eu Slides are available at: http://bioinformatics.plants.ox.ac.uk/EBI_2014/EBI_2014.ppt Example data is available at: http://bioinformatics.plants.ox.ac.uk/EBI_2014/reads.zip. What is a de novo transcriptome?.

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CBI NGS Workshop Lesson 4 The Genome Analysis Toolkit (GATK)

CBI NGS Workshop Lesson 4 The Genome Analysis Toolkit (GATK). Liu Huan( ?? ) Center for Bioinformatics, Peking University 2011-05-30. Outline. Basic Concepts Overview for Variant Discovery GATK Architecture Data Processing Pipeline of GATK for Variant Detection. Basic Concepts.

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Intelligent Healthcare

Intelligent Healthcare. Improving Patient Care with Online Disease Registries Inexpensive solutions to expensive health care data problems Presented to The Quality Colloquium August 22, 2006. Who We Are.

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Next Generation Sequencing

Next Generation Sequencing. Sequencing techniques. ChIP-seq MBD-seq (MIRA-seq) BS-seq RNA-seq miRNA-seq. ChIP-seq. ChIP-Seq is a new frontier technology to analyze in vivo protein-DNA interactions. ChIP-Seq

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Next Generation Sequencing

Next Generation Sequencing. Sequencing techniques. ChIP-seq MBD-seq (MIRA-seq) BS-seq RNA-seq miRNA-seq. ChIP-seq. ChIP-Seq is a new frontier technology to analyze in vivo protein-DNA interactions. ChIP-Seq

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September 26, 2008

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Assignment 2: Papers read for this assignment

Assignment 2: Papers read for this assignment. Paper 1: PALMA: mRNA to Genome Alignments using Large Margin Algorithms Paper 2: Optimal spliced alignments of short sequence reads. Badil Elhady, Michael Chan . Paper 1: PALMA: mRNA to Genome Alignments using Large Margin Algorithms.

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Effect of Physician Pay-for-Performance (P4P) Incentives in a Large Primary Care Group Practice

Effect of Physician Pay-for-Performance (P4P) Incentives in a Large Primary Care Group Practice. Presenter: Harold Luft, PhD 1,2 Collaborators: Sukyung Chung, PhD 1,2 , Latha Palaniappan, MD, MS 1 Haya Rubin, MD, PhD Laurel Trujillo, MD 3 Eric Wong, MS 1

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The NGS Era is Now

The NGS Era is Now. Eric T. Weimer, PhD, D(ABMLI) Assistant Professor, Pathology & Laboratory Medicine, UNC School of Medicine Director, Molecular Immunology Associate Director, Clinical Flow Cytometry, HLA, and Immunology Laboratories at UNC Health Care. CONFLICT OF INTEREST

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Optimizing Career Value

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Quality of Care in Physician Groups Do Larger Integrated Systems Deliver Higher Quality Care?

Quality of Care in Physician Groups Do Larger Integrated Systems Deliver Higher Quality Care?. Ateev Mehrotra MD MPH RAND Pittsburgh & University of Pittsburgh AcademyHealth Annual Research Meeting June 5 th 2007. Background. Organization of Physician Groups Integrated Medical Groups

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CRAM: reference-based compression format developed by Vadim Zalunin

CRAM: reference-based compression format developed by Vadim Zalunin. Data horror. EMBL-EBI 10 petabytes SRA ~1 petabytes Over 2 million DVDs or 2.5km Complete Genomics 0.5 TB for a single file. The need for compression. Red alert. Compression, what is it?. BMP, 190 kb. PNG, 100 kb.

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Mapping Sequence Tags

Mapping Sequence Tags. Advanced Genomic Data Analysis BIOS 691- 804, 2012 Mark Reimers. Raw Data Formats. Proprietary formats for each technology Illumina 454 gives relative luminescence after adding each base. Raw Data Formats. Most common format is FASTQ Four rows per read

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Quality Control of Illumina Data

Quality Control of Illumina Data. Mick Watson Director of ARK-Genomics The Roslin Institute. Quality scores. Quality scores. The sequencer outputs base calls at each position of a read It also outputs a quality value at each position

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Improving the quality of responses to health search queries by evidence-based context

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6 Myths About Landing Page And Quality Scores

TwitterFacebookLinkedIn Hacks and myths busters are great to have around as friends. They tend to collect various types of information one can only imagine. Every topic has myths to bust and here are 6 myths about landing page and quality scores that will change how you view business models in general.

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The Ultimate Cheat Sheet On Google Adwords

Google Adwords gives you a variety of options that allow you to leverage the power of the largest search engine in the world. This guide shows you, how can you manage AdWords campaign.

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