'Reverse complement' diaporamas de présentation

Introduction to Genetics and Genomics

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DNA Sequencing with Longer Reads

DNA Sequencing with Longer Reads. Byung G. Kim Computer Science Dept. Univ. of Mass. Lowell kim@cs.uml.edu. Outline. DNA distribution Counting problem DNA sequencing Reassemble DNA fragments Part of $1,000 genome sequencing. Bioinformatics. What is bioinformatics ? Intersection

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Perl Programming

Perl Programming. Paul Tymann Computer Science Department Rochester Institute of Technology ptt@cs.rit.edu. Strings. A collection of characters This slide consists of a sequence of strings CS folk have been working with strings for years

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High-Fidelity DNA Hybridization using Programmable Molecular DNA Devices

High-Fidelity DNA Hybridization using Programmable Molecular DNA Devices. Nikhil Gopalkrishnan, Harish Chandran & John Reif. Fidelity of Hybridization. Perfect hybridization. Mismatched hybridization.

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MCB 5472

MCB 5472. Psi BLAST, Perl: Arrays, Loops, Hashes . J. Peter Gogarten Office: BPB 404 phone: 860 486-4061, Email: gogarten@uconn.edu. Blast: find High Scoring Pairs between query and database of target sequences

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Object Oriented Perl

Object Oriented Perl. Object Oriented Perl. Object Oriented Programming is a common method for encapsulation of code Object Oriented Programming allows you to use very complex methods without ever having to write them or even understand them

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Introduction to Python

Introduction to Python. BCHB524 2013 Lecture 5. Outline. Review DNA as a string Extracting codons in DNA Counting in-frame codons in DNA Reverse Complement Program Input/Output raw_input, command-line arguments standard-input, standard-output, redirection. Review.

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MCB 5472

MCB 5472. Psi BLAST, Perl: Arrays, Loops . J. Peter Gogarten Office: BPB 404 phone: 860 486-4061, Email: gogarten@uconn.edu. Psi-Blast Results. Query: 55670331 (intein). link to sequence here , check BLink ?. PSI BLAST and E-values!.

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A new law in genomics ?

A new law in genomics ?. Richard Christen CNRS-UNSA UMR 6543 christen@unice.fr. Ci-joint un des articles auquel je pensais pendant ton coup de fil. Amicalement, Jean R. Lobry. Watson Crick. ATCGAGTC. TAGCTCAG.

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Computer Programming for Biologists

Computer Programming for Biologists. Class 8 Nov 29 th , 2013 Karsten Hokamp http://bioinf.gen.tcd.ie/GE3M25/programming. Computer Programming for Biologists. Overview. Extend class project Subroutines. Computer Programming for Biologists. Subroutines. write your own functions

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Stochastic Local Search Algorithms for DNA word Design

Stochastic Local Search Algorithms for DNA word Design. Dan C Tulpan, Holger H Hoos, and Anne Condon Summerized by Ji-Eun Yun. Introduction(1). Present results on the performance of a stochastic local search algorithm for the design of DNA code . Motivate

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BioPython Tutorial

BioPython Tutorial. Joe Steele Ishwor Thapa. BioPython home page. http:// biopython.org/wiki/Main_Page http:// biopython.org/DIST/docs/tutorial/Tutorial.html. Content. Automatically parses files into python data structures, with support for : BLAST output Clustalw FASTA GenBank

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MicroRNA

MicroRNA. INTRODUCTION. miRNAs are RNA genes which are transcribed from DNA, but are not translated into protein . A miRNA (micro-RNA) is a form of single-stranded RNA which is typically 20-25 nucleotide long . It is thought to regulate the expression of other genes.

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Lecture 8:

Lecture 8: . Basic concepts of subroutines. Functions . In perl functions take the following format: sub subname { my $var1 = $_[0]; statements Return value } After all the subs are defined they are then called as required: my $variable = subname ($name); The SubroutineExample.pl.

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Genetics & Genotyping

Genetics & Genotyping. By Kristin Gill & Daisy Robinton HC70AL Spring 2009. What are the possible genotypes?. Homozygous Wildtype Hemizygous Wildtype/T-DNA Homozygous T-DNA. What is the expected ratio of genotypes?. 1 : 2 : 1. Homozygous Wildtype. Homozygous T-DNA. Hemizygous.

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