'Score matrix' diaporamas de présentation

BLAST Quick Start

BLAST Quick Start. blast-help@ncbi.nlm.nih.gov. Algorithm Basics. Introduction Words & extensions. Search Basics. Programs Databases Submit a search Interpret the results BLAST options Format options Examples. Basic Local Alignment Search Tool.

981 views • 68 slides

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????. 2010.11.4 Written By ???. Outline. ???? ?? Pairwise alignment/Multiple Sequence Alignment dot-matrix representation Needleman- wunsch algorithm Smith-Waterman algorithm PAM BLOSUM. ????? ??. ?????? ??? ?? ?? - ? ??? ??? ??? ??? , ???? ???

613 views • 38 slides

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????. 2010.11.4 Written By ???. Outline. ???? ?? Pairwise alignment/Multiple Sequence Alignment dot-matrix representation Needleman- wunsch algorithm Smith-Waterman algorithm PAM BLOSUM. ????? ??. ?????? ??? ?? ?? - ? ??? ??? ??? ??? , ???? ???

629 views • 38 slides

Yang Gao , Jason D. Bakos Heterogeneous and Reconfigurable Computing Lab (HeRC)

413 views • 28 slides

CS 451 / 558

CS 451 / 558. Week 4, Tue. Scoring an alignment. Let: x k := the kth letter of x y k := the kth letter of y. Input : string x , length m string y , length n (both from alphabet S [ACGT]) scoring matrix s , s.t. s ( a,b ) := the score of aligning a to b gap penalty g

457 views • 27 slides

Fast Sequence Alignment Methods Using CUDA-enabled GPU

Fast Sequence Alignment Methods Using CUDA-enabled GPU. Authors: Yeim-Kuan Chang, De-Yu Chen Present: Pei-Hua Huang Date : 2014/06/04. Department of Computer Science and Information Engineering National Cheng Kung University, Taiwan R.O.C. INTRODUCTION.

420 views • 26 slides

Sequence Alignment with Traceback on Reconfigurable Hardware

Sequence Alignment with Traceback on Reconfigurable Hardware. Author :Scott Lloyd and Quinn O. Snell Publisher/Conf : 2008 International Conference on Reconfigurable Computing and FPGAs Speaker : De-yu-Chen Data : 2010.5.5. Introduction (1/2).

311 views • 22 slides

Internet Assisted Review

Internet Assisted Review. Focus Group June 3, 2002. Agenda. 2nd Review of Streamlining Sample Screens and requirements 2nd Review of IAR Control Center Sample Screens Edit Phase Requirements Summary Statement Assembly Requirements Reports Requirements. Streamlining Sample Screens.

217 views • 21 slides

Sequence comparison: Score matrices

Sequence comparison: Score matrices. http://faculty.washington.edu/jht/GS559_2013/. Genome 559: Introduction to Statistical and Computational Genomics Prof. James H. Thomas. FYI - informal inductive proof of best alignment path.

285 views • 19 slides

Whole genome alignments

Whole genome alignments. Genome 559: Introduction to Statistical and Computational Genomics Prof. James H. Thomas. Review. What a score matrix is and how to calculate and use one. Why an affine gap penalty is desirable. How to align sequences using dynamic programming.

295 views • 18 slides

Sequence comparison: Significance of similarity scores

Sequence comparison: Significance of similarity scores. http://faculty.washington.edu/jht/GS559_2012/. Genome 559: Introduction to Statistical and Computational Genomics Prof. James H. Thomas. Review. How to compute and use a score matrix.

219 views • 15 slides

Challenges

Adnan Ozsoy, Arun Chauhan, Martin Swany School of Informatics and Computing, Indiana University, Bloomington. Towards Tera - scale Performance for Longest Common Subsequence using Graphics Processors. INDIANA UNIVERSITY. Objective. Design Principles. Longest Common Subsequence.

153 views • 1 slides