'Sequence evolution' diaporamas de présentation

Introduction to Phylogenetic Estimation Algorithms

Introduction to Phylogenetic Estimation Algorithms. Tandy Warnow. Phylogeny. From the Tree of the Life Website, University of Arizona. Orangutan. Human. Gorilla. Chimpanzee. Phylogenetic Analysis. Gather data Align sequences Estimate phylogeny on the multiple alignment

1.3k views • 107 slides

Comparing Two Protein Sequences

719 views • 71 slides

Lecture 3 Molecular Evolution and Phylogeny

Lecture 3 Molecular Evolution and Phylogeny. Facts on the molecular basis of life. Every life forms is genome based Genomes evolves There are large numbers of apparently homlogous intra-genomic (paralog) and inter-genomic (ortholog) genes

1.15k views • 54 slides

Statistical tree estimation

Statistical tree estimation. Tandy Warnow. Topics: March 6-15. Stochastic models of sequence evolution Distance-based estimation Maximum parsimony tree estimation Maximum likelihood tree estimation Bayesian tree estimation. March 6, 2017. Two sequence evolution models:

667 views • 49 slides

New methods for simultaneous estimation of trees and alignments

New methods for simultaneous estimation of trees and alignments. Tandy Warnow The University of Texas at Austin. Species phylogeny. From the Tree of the Life Website, University of Arizona. Orangutan. Human. Gorilla. Chimpanzee. How did life evolve on earth?.

525 views • 46 slides

New methods for simultaneous estimation of trees and alignments

New methods for simultaneous estimation of trees and alignments. Tandy Warnow The University of Texas at Austin. Species phylogeny. From the Tree of the Life Website, University of Arizona. Orangutan. Human. Gorilla. Chimpanzee. How did life evolve on earth?.

506 views • 46 slides

New methods for simultaneous estimation of trees and alignments

New methods for simultaneous estimation of trees and alignments. Tandy Warnow The University of Texas at Austin. Species phylogeny. From the Tree of the Life Website, University of Arizona. Orangutan. Human. Gorilla. Chimpanzee. How did life evolve on earth?.

526 views • 46 slides

New methods for simultaneous estimation of trees and alignments

New methods for simultaneous estimation of trees and alignments. Tandy Warnow The University of Texas at Austin. How did life evolve on earth?. An international effort to understand how life evolved on earth

551 views • 45 slides

New methods for simultaneous estimation of trees and alignments

New methods for simultaneous estimation of trees and alignments. Tandy Warnow The University of Texas at Austin. How did life evolve on earth?. An international effort to understand how life evolved on earth

496 views • 45 slides

Doug Szajda Mike Pohl * Jason Owen Barry Lawson

Toward a Practical Data Privacy Scheme for a Distributed Implementation of the Smith-Waterman Genome Sequence Comparison Algorithm. Doug Szajda Mike Pohl * Jason Owen Barry Lawson. 1. Large-Scale Distributed Computations. Easily parallelizable, compute intensive

465 views • 39 slides

Major Application Areas of Molecular Evolution

451 views • 33 slides

14 Molecular Evolution and Population Genetics

14 Molecular Evolution and Population Genetics . Population Genetics. Gene pool = the complete set of genetic information in all individuals within a population Genotype frequency = proportion of individuals in a population with a specific genotype

514 views • 29 slides

An Introduction to Phylogenetic Methods

540 views • 28 slides

GSR The Gene Sequence evolution model with iid Rate variation over tree

296 views • 21 slides

Genome Research 2004 By Peter D. Keightly & Toby Johnson

MCALIGN: Stochastic Alignment of Non-coding DNA Sequences based on an Evolutionary Model of Sequence Evolution. Genome Research 2004 By Peter D. Keightly & Toby Johnson. Majid Kazemian. Motivations.

284 views • 19 slides

MCALIGN Monte Carlo Align A sequence evolution model based alignment method

MCALIGN Monte Carlo Align A sequence evolution model based alignment method Keightley PD, Johnson T ., MCALIGN: stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution, Genome Res. 2004 Mar;14(3):442-50. Non-coding DNA and heuristics.

231 views • 17 slides

Phylogenetics

268 views • 15 slides

Models of Molecular Evolution I

273 views • 14 slides

Population Genetics and Recombination Histories

Population Genetics and Recombination Histories. Finding Minimal Recombination Histories. 1. 2. 3. 4. 1. 2. 3. 1. 4. 2. 3. 4. Population Genetics and Genealogies. Forward in time. Backward in time. NOW. Recombination. Gene Conversion. Coalescent/Duplication. Mutation.

263 views • 14 slides