'Tree building' diaporamas de présentation

MSA- multiple sequence alignment

MSA- multiple sequence alignment. Aligning many sequences is often preferable to pairwise comparisons. Problem- Computational complexity of multiple alignments grows rapidly with the number of sequences being aligned. .

1.33k views • 98 slides

Tree-building methods: Distance vs. Char

Tree-building methods: Distance vs. Char. Distance-based methods involve a distance metric, such as the number of amino acid changes between the sequences, or a distance score. Examples of distance-based algorithms are UPGMA and neighbor-joining.

1.49k views • 71 slides

Application Layer Multicasting

Application Layer Multicasting. Yash Sheth 42961722 Swapnil Tiwari 63242307 Vishal Sahu 19489633. Application Layer Multicast. Multicasting is increasingly used as a efficient and scalable mechanism for the dissemination of data across heterogeneous systems on the internet

838 views • 68 slides

Multicast

Multicast. Presented by Hakim Weatherspoon Slides borrowed from Qi Huang 2009 and Tom Ternquist 2010. Midterm report. abstract , introduction , background, related work, and design section.

777 views • 63 slides

JavaCC

JavaCC. CMSC 431 Spring 04. What is a parser generator. Scanner. Parser. assignment . Total. =. Expr . Parser generator (JavaCC). id + id. price . tax . lexical+grammar specification. JavaCC.

888 views • 57 slides

Building phylogenetic trees

Building phylogenetic trees. Jurgen Mourik & Richard Vogelaars Utrecht University. Overview. Background Making a tree from pairwise distances; Parsimony; <break>; Assessing the trees: the bootstrap; Simultaneous alignment and phylogeny; Application: Phylip. Background.

798 views • 55 slides

Building phylogenetic trees

Building phylogenetic trees. Jurgen Mourik & Richard Vogelaars Utrecht University. Overview. Background Making a tree from pairwise distances; Parsimony; <break>; Assessing the trees: the bootstrap; Simultaneous alignment and phylogeny; Application: Phylip. Background.

790 views • 55 slides

Compiler Structures

Compiler Structures. 241-437 , Semester 1 , 2011-2012. Objective extend the expressions language compiler to generate a parse tree for the input program, and then evaluate it. 9. Creating and Evaluating a Parse Tree. Overview. 1 . The Expressions Grammar 2 . exprParse2.c

672 views • 53 slides

BCB 444/544

743 views • 49 slides

CSE 554 Lecture 5: Contouring (faster)

CSE 554 Lecture 5: Contouring (faster). Fall 2016. Review. Iso -contours Points where a function evaluates to be a given value ( iso -value) Smooth thresholded boundaries Contouring methods Primal methods Marching Squares (2D) and Cubes (3D) Placing vertices on grid edges

445 views • 44 slides

CSE 554 Lecture 3: Contouring II

CSE 554 Lecture 3: Contouring II. Fall 2011. Review. Iso-contours Points where a function evaluates to a same value (iso-value) Smooth thresholded boundaries Contouring methods Primal methods Marching Squares (2D) and Cubes (3D) Placing vertices on grid edges Dual methods

573 views • 42 slides

BCB 444/544

BCB 444/544. Lecture 29 Phylogenetics #29_Oct31. Required Reading ( before lecture). Mon Oct 29 - Lecture 28 Promoter & Regulatory Element Prediction Chp 9 - pp 113 - 126 Wed Oct 30 - Lecture 29 Phylogenetics Basics Chp 10 - pp 127 - 141 Thurs Oct 31 - Lab 9

518 views • 30 slides

Tree building

Tree building. The number of strictly bifurcating, unrooted trees for T taxa (=leaves, =terminal branches) is given by:. Note that the number of trees increases with T at much greater than exponential rate (actually related to the factorial). Tree building strategy. T3. T3. T3. T2. T2.

423 views • 30 slides

Four butterflies connected to their parents

offspring. parents. Four butterflies connected to their parents. future. Individuals. past. Population. Population. Lineage/ Species. Phylogeny. Representation of phylogenies. A. B. C. A. B. C. A simplified representation. The True History. Tree Reading. Topological equivalence.

358 views • 26 slides

Four butterflies connected to their parents

offspring. parents. Four butterflies connected to their parents. future. Individuals. past. Population. Population. Lineage/ Species. Phylogeny. Representation of phylogenies. A. B. C. A. B. C. A simplified representation. The True History. Tree Reading. Topological equivalence.

261 views • 26 slides

Models of sequence evolution

731 views • 24 slides

Association Rule Mining

Association Rule Mining. Example: for {2,3,5}, min_conf = 75%. {2,3} ? 5. {2,5} ? 3. {3,5} ? 2. Generating assoc. rules from frequent itemsets. Assume that we have discovered the frequent itemsets and their support How do we generate association rules? Frequent itemsets:.

374 views • 20 slides

Learning Evolution and Phylogeny Through Tree Building

Learning Evolution and Phylogeny Through Tree Building. Larry Aaronson, Utica College David Treves , Indiana Univ., Southeast Monica Trifas , Jacksonville State Univ. Audience (at Utica College). Junior and senior biology, biochemistry and pre-med students Have had genetics, cell biology

305 views • 19 slides

Decision Tree Learning

272 views • 14 slides

INTRODUCTION

Tensor-based High-order Semantic Relation Transfer for Semantic Scene Segmentation. Heesoo Myeong and Kyoung Mu Lee Department of ECE, ASRI, Seoul National University, Seoul, Korea. sky. sky. http://cv.snu.ac.kr. tree. tree. building. building. building. building. car. car. car.

124 views • 1 slides