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Preliminary validation of content-based compression of mammographic images

Preliminary validation of content-based compression of mammographic images. Brad Grinstead Hamed Sari-Sarraf, Shaun Gleason, and Sunanda Mitra Funded in part by: National Science Foundation. Abstract. Overview. Objective To Make Telemammography More Viable

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Preliminary validation of content-based compression of mammographic images

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  1. Preliminary validation of content-based compression of mammographic images Brad Grinstead Hamed Sari-Sarraf, Shaun Gleason, and Sunanda Mitra Funded in part by: National Science Foundation

  2. Abstract

  3. Overview • Objective • To Make Telemammography More Viable • Decrease Transmission Time • Decrease Storage Requirements • Concept • Fractal-Based Automatic Data Segmentation • Divides the Mammogram into 2 regions • Background Regions • Focus-of-Attention Regions (FARs) • Combination of Lossy and Lossless Encoding • Decreases Storage Requirements While Preserving Detail

  4. Motivation • When Talking About Compression of Medical Images, There Are Two Camps • Lossless Compression • Preserves Detail • Lossy Compression • Reduces Storage Requirements • Content-Based Compression (CBC) Allows Us to Please Both Camps By Offering More Compression, While Preserving Detail in the Areas of Interest

  5. Content-Based Compression Approach Lossy Compression 80:1 Background 83% of Image Total Compression 15:1 While Preserving Vital Information Lossless Compression 2:1 FAR 17% of Image

  6. Fractal Analysis Digitized Mammogram or Synthesized Fractal

  7. Input Image Quadtree Partition Selected Subset FARs Microcalcifications Have Been Circled for Ease of Viewing

  8. Combination of Compression Techniques Original Image FARs That Will Be Losslessly Encoded Superposition of Losslessly Encoded FARs Over Lossy Image CR=11.52 80:1 Lossy Coding of Entire Image

  9. CBC Software Flow for a Single Sub-Image START Read in Sub-image Perform FAR Generation on Sub-Image Perform Lossy Compression Area Opening Encode FAR Locations and Data Perform Lossless Compression Combine Compression Results END

  10. CBC Results

  11. CAD System Used for Validation Module 1 Digitized Mammogram Breast Segmentation Convolution Global Thresholding Module 2 Region Growing Local Thresholding Module 3 Screening Result Feature Extraction Labeling The Output of Module 1 is Used for Validation Purposes

  12. Application of CAD Module 1 to Original Sub-image Sub-image Result of Convolution Thresholding Result Microcalcifications Have Been Circled for Ease of Viewing

  13. Application of CAD Module 1 to CBC Sub-image (CR=6.4:1) Sub-image Result of Convolution Thresholding Result Microcalcifications Have Been Circled for Ease of Viewing

  14. Validation Results • For the Highest Compression Ratio and Lowest Microcalcification Coverage Rate, 93% of the Microcalcifications Were Detected • For the Lowest Compression Ratio and Highest Microcalcification Coverage Rate, 97%of the Microcalcifications Were Detected • This shows that the 80:1 compression ratio leaves some of the information outside of FARs intact, while achieving decent compression • Higher compression ratios will introduce too much distortion, causing microcalcifications outside of FARs to be completely missed • In addition, context information contained in the background tissue, which is useful to radiologists, has been preserved

  15. Validation Results • The Mammogram That Had the Highest Compression Ratio Also Had the Highest Detection Rate • This Suggests That There is Not a Direct Relationship Between Microcalcification Detection and the Compression Ratio

  16. Concluding Remarks • Summary • To Improve the Viability of Telemammography by Exploring the Following Concepts: • Focus of Attention Regions • Use the Partial Self-Similarity Inherent in Images to Reduce the Input Data • Use Quadtree Fractal Encoding to Generate FARs • Content-Based Compression • Obtain Compression Ratio 5-10 Times Greater Than Lossless Compression Alone, While Preserving the Important Information

  17. References • The Breast Cancer Resource Center of the American Cancer Society (http://www.cancer.org) • S.J. Dwyer III, “PACS Intra and Inter,” 8th IEEE Symposium on Computer-Based Medical Systems, 1998. • M. G. Strintzis, “A Review of Compression Methods for Medical Images in PACS,” Int. J. Med. Inf.52(1-3), pp. 159-165, 1998. • H. P. Chan, et al., “Image Compression in Digital Mammography: Effects on Computerized Detection of Subtle Microcalcifications,” Med. Phys.23(8), pp. 1324-1336, 1996. • R. M. Gray, et al., “Evaluating Quality and Utility in Digital Mammography,” IEEE Int. Conf. on Image Proc., pp. 5-8, October 1996. • B. Grinstead, H. Sari-Sarraf, S. Gleason, and S. Mitra, “Content-Based Compression of Mammograms for Telecommunication,” 13th IEEE Symposium on Computer-Based Medical Systems, pp.37-42, 2000. • D. Nister, and C. Christopoulos, “Lossless region of interest coding,” Signal Processing, 78, pp. 1-17, 1999 • E.J. Halpern et al., “Application of region of interest definition to quadtree-based compression of CT images,” Investigative Radiology, 25, pp.703-707, June 1990. • H. Sari-Sarraf, et al., "A Novel Approach to Computer-Aided Diagnosis of Mammographic Images," 3rd IEEE Workshop on Applications of Comp. Vision, December 1996. • H. Li, K.J.R. Liu, and S.-C.B. Lo, “Fractal modeling and segmentation for the enhancement of microcalcifications in digital mammograms,” IEEE Trans. Med. Imaging16, pp. 785-798, 1997. • Y. Fisher, "Fractal image compression with quadtrees," Fractal Compression : Theory and Application to Digital Images, Y. Fisher, ed., pp. 55-77, Springer Verlag, New York, 1994. • H. Sari-Sarraf, et al., “Front-End Data Reduction in Computer-Aided Diagnosis of Mammograms: A Pilot Study,” SPIE's Medical Imaging Conf., February 1999. • S. Mitra, et al., “High Fidelity Adaptive Vector Quantization at Very Low Bit Rates for Progressive Transmission of Radiographic Images,” J. Electronic Imaging8(1), 1999, pp. 23-35. • J. Shapiro, “Embedded Image Coding Using Zerotrees of Wavelet Coefficients,” Transactions on Signal Processing, 41(12), December 1993, pp. 3445-3462. • A. Said and W. Perlman, “A New, Fast, and Efficient Image Codec Based on Set Partitioning in Hierarchical Trees,” IEEE Transactions on Circuits and Systems for Video Technology, 6(3) , pp. 243-249, June 1996. • P.G. Howard, and J.S. Vitter, “Arithmetic Coding for Data Compression,” Proceedings of the IEEE, 82(6), June 1994. • H.P. Chan, et al., “Improvement in radiologists’ detection of microcalcifications on mammograms: The potential of computer-aided diagnosis,” Investigative Radiology, 25 pp. 1102-1110, 1990. • S. S. Gleason, H. Sari-Sarraf, K. T. Hudson, and K. F. Hubner, “Higher accuracy and throughput in computer-aided screening of mammographic microcalcifications,” IEEE Medical Imaging Conf., 1997.

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