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MGI Updates

MGI Updates. Joel Richardson. MGI 5.0. M otivation: Get off Sybase Modernize infrastructure Features: Frontend db no longer a clone of backend db Translation step (the Mover) Engines: Postgres , Lucene / Solr (performance!) Server: Jboss , SpringMVC

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MGI Updates

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  1. MGI Updates Joel Richardson GMOD Meeting

  2. MGI 5.0 • Motivation: • Get off Sybase • Modernize infrastructure • Features: • Frontend db no longer a clone of backend db • Translation step (the Mover) • Engines: Postgres, Lucene/Solr (performance!) • Server: Jboss, SpringMVC • Client: AJAX, YUI. Pagable/exportable results. Web services. • Backend (master) remains on Sybase for now • When: • Next week GMOD Meeting

  3. IMSR 3.0 • See previous slide • Completely off Sybase (frontend and backend) • Frontend completely Lucene/Solr driven. (Blazingly fast) • New look GMOD Meeting

  4. MouseMine • Part of the InterMOD consortium • Initial version will contain a subset of MGI, plus a little more: • Features (mouse&human); Coordinates; Orthologies; Synteny blocks; Alleles; Strains and Genotypes; Annotations (GO, MP, Disease); Pubs; Cross refs; • Updated weekly (in sync with MGI) • Status: • Hired a developer • Completed several rounds of prototyping • Currently setting up servers in local cloud • Anticipate first public release: Q3 this year GMOD Meeting

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