1 / 16

PC Cluster Setup on Linux Fedora Core 5

PC Cluster Setup on Linux Fedora Core 5. High Performance Computing Lab Department of Computer Science and Information Engineering Tunghai University, Taichung, Taiwan 40704, ROC Presenter: Hao-Yu Tung. Contents. Install Linux OS Set up Network Information System (NIS)

tommy
Télécharger la présentation

PC Cluster Setup on Linux Fedora Core 5

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. PC Cluster Setup on Linux Fedora Core 5 High Performance Computing Lab Department of Computer Science and Information Engineering Tunghai University, Taichung, Taiwan 40704, ROC Presenter: Hao-Yu Tung

  2. Contents • Install Linux OS • Set up Network Information System (NIS) • Set up Network File System (NFS) • Set up Secure Shell (SSH) • Set up Message Passing Interface (MPI) HPC Lab., CSIE@Tunghai University

  3. Install Linux OS • Install Fedora Core 5 Linux distribution • Install from CD-ROM • Install from network (create a boot disk) • Full install or custom if you are an expert • Set separate IP for each machine (e.g. 192.168.1.1, 192.168.1.2) HPC Lab., CSIE@Tunghai University

  4. Install Linux OS (cont.) • Partition • Consider you have a hard driver with 30GB in size • Full installation of Fedora Core 5 will using 5GB available disk space • Server side: • / 10GB, holding root file system and RPM packages • Swap 256MB, as large as your physical memory • /home the rest size of the disk , for NFS home usage • Client side: • Swap 256MB, as large as your physical memory • / the rest size of the disk • Disable the firewall and reboot • #chkconfig --level 345 iptables off • #chkconfig --level 345 ip6tables off (optional) HPC Lab., CSIE@Tunghai University

  5. Install Linux OS (cont.) • After installation, you will use “adduser” and “passwd” to add a normal user on server • #adduser [test] • #passwd [test] • Editing your “/etc/hosts” file • # vi /etc/hosts Here should be your server and client private ip and hostname HPC Lab., CSIE@Tunghai University

  6. Set up NIS (Server side) • Install NIS server • #wget http://ftp.isu.edu.tw/pub/Linux/Fedora/linux/core/5/i386/os/Fedora/RPMS/ypserv-2.19-0.i386.rpm • #rpm –ivh ypserv-2.19-0.i386.rpm • Setting up NIS domain name on file “/etc/rc.d/rc.local" • #nisdomainname cluster • #vi /etc/rc.d/rc.local Temporary (Disappears after reboot) Add this line HPC Lab., CSIE@Tunghai University

  7. Set up NIS (Server side) • Enabling ypserv and yppasswdd service • #service ypserv restart • #service yppasswdd restart • #chkconfig –level 345 ypserv on • #chkconfig –level 345 yppasswdd on • Makefile • #cd /var/yp • #make You’ll see this after using the command “make” HPC Lab., CSIE@Tunghai University

  8. Set up NIS (Client side) • Install NIS client • #wget http://ftp.isu.edu.tw/pub/Linux/Fedora/linux/core/5/i386/os/Fedora/RPMS/ypbind-1.19-0.i386.rpm • #rpm –ivh ypbind-1.19-0.i386.rpm • Setting up NIS domain name on file “/etc/rc.d/rc.local" • #nisdomainname cluster • #vi /etc/rc.d/rc.local Temporary (Disappears after reboot) Add this line HPC Lab., CSIE@Tunghai University

  9. Set up NIS (Client side) • Enabling ypbind service • #service ypbind restart • #chkconfig –level 345 ypbind on • Editing “/etc/nsswitch” file • # vi /etc/nsswitch.conf Original file HPC Lab., CSIE@Tunghai University

  10. Set up NIS (Client side) • Enabling ypbind service • #service ypbind restart • #chkconfig –level 345 ypbind on Change to this HPC Lab., CSIE@Tunghai University

  11. Set up NIS (Client side) • For testing NIS on client • #yptest HPC Lab., CSIE@Tunghai University

  12. Set up NFS (Server side) • Server Side • Create file “/etc/exports” to configure NFS in /etc directory by root privilege • /home 192.168.1.0/255.255.255.0(rw,no_root_squash) • /usr/local 192.168.1.0/255.255.255.0(rw,no_root_squash) • Enable the NFS daemon • #chkconfig --level 345 nfs on • #service nfs restart No blank space within this line HPC Lab., CSIE@Tunghai University

  13. Set up NFS (Client side) • Client Sides • Testing configuration (Optional) • #mount –t nfs server:/home /home • #mount –t nfs server:/usr/local /usr/local • Edit file “/etc/fstab” by adding the following two lines • server:/home /home nfs defaults 0 0 • server:/usr/local /usr/local nfs defaults 0 0 • Move original home to home2 and create a new home • #mv home home2 • #mkdir home • Re-mount file system or reboot • #mount –a HPC Lab., CSIE@Tunghai University

  14. Set up SSH • Enable SSH server • #chkconfig --level 345 sshd on • #service sshd restart • If you want to use ssh without password by the following steps in your account • $ssh-keygen -t rsa • $cd /home/[user]/.ssh/ • $cp id_rsa.pub authorized_keys2 • $ssh [client_machine] HPC Lab., CSIE@Tunghai University

  15. Setup MPI • Install MPI on server and client respectively by using root account • #wget http://ftp.isu.edu.tw/pub/Linux/Fedora/linux/core/5/i386/os/Fedora/RPMS/libaio-0.3.106-2.2.i386.rpm • #rpm –ivh libaio-0.3.106-2.2.i386.rpm • #wget http://ftp.isu.edu.tw/pub/Linux/Fedora/linux/core/5/i386/os/Fedora/RPMS/libaio-devel-0.3.106-2.2.i386.rpm • #rpm –ivh libaio-devel-0.3.106-2.2.i386.rpm • #wget http://ftp.isu.edu.tw/pub/Linux/Fedora/linux/core/5/i386/os/Fedora/RPMS/lam-7.1.1-11.i386.rpm • #rpm –ivh lam-7.1.1-11.i386.rpm • Use MPI (cannot use root account) • Create file “lamhost” • $recon –v lamhost • $lamboot –v lamhost • $wipe –v lamhost HPC Lab., CSIE@Tunghai University

  16. Setup MPI (cont.) • Complie MPI C program • $mpicc –o file file.c • Execute MPI C program • $mpirun –np <process number> file HPC Lab., CSIE@Tunghai University

More Related