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Tiling array analysis suggests over- expression of EDF2 or HC-Pro results

Tiling array analysis suggests over- expression of EDF2 or HC-Pro results in up-regulation of many similar transcripts. Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. All comparisons made to wild-type Col-0.

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Tiling array analysis suggests over- expression of EDF2 or HC-Pro results

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  1. Tiling array analysis suggests over- expression of EDF2 or HC-Pro results in up-regulation of many similar transcripts Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. All comparisons made to wild-type Col-0

  2. Tiling array analysis suggests over- expression of EDF2 or HC-Pro results in down-regulation of many similar transcripts Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. All comparisons made to wild-type Col-0

  3. Loss of EDF2 function causes up-regulation of transcripts involved in genome organization Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. Comparison made was edf2-1 > Col-0

  4. Over-expression of EDF2 leads to inappropriate stress and defense responses Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. Comparison made was EDF2ox > Col-0

  5. GO term analysis suggests EDF2 is responsible for multiple inappropriate stress responses in HC-Proox plants Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. Comparison made was HC-Proox > edf2-1 HCProox

  6. GO term analysis suggests EDF2 is responsible for multiple inappropriate stress responses in HC-Proox plants Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. Comparison made was HC-Proox > edf2-1 HCProox

  7. GO term analysis suggests loss of EDF2 restores proper chromatin organization in HC-Proox plants Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. Comparison made was edf2-1 HC-Proox > HCProox

  8. GO term analysis suggests overexpression of EDF2 results in mis-regulation of the circadian clock Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. Comparison made was Col-0 > EDF2ox

  9. GO term analysis suggests loss of EDF2 partially rescues circadian clock mis-regulation in HC-Proox plants HC-Proox edf2-1/HC-Proox Analysis done using Tilemap with settings: 0.6pp, 100bp interval, expected hybridization length of 3 probes. Comparisons made were Col-0 > HC-Proox and Col-0 > edf2-1/HC-Proox

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