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BIRN Workflow Portal

BIRN Workflow Portal. Shawn Murphy Michael Mendis. Goals. Allow mBIRN software to be consumed by both inside and outside groups on a consistent computing platform Able to integrate various different pipeline applications (LONI, FIPS, jBPM) into an analysis

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BIRN Workflow Portal

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  1. BIRNWorkflow Portal Shawn Murphy Michael Mendis Biomedical Informatics Research Network

  2. Goals • Allow mBIRN software to be consumed by both inside and outside groups on a consistent computing platform • Able to integrate various different pipeline applications (LONI, FIPS, jBPM) into an analysis • Infinite undo/redo from various points in an analysis; able to recalculate and compare results • Possible to distribute computing to various sites by promoting web services Biomedical Informatics Research Network

  3. Authentication Services (GAMA) Data Grid (SRB) BIRN Infrastructure BIRN-CC Development Environment Biomedical Informatics Research Network

  4. Final hardening of the Portal workflow application • Provide complete workflow management solution in the Workbench • Improve functioning with GAMA authentication server • Improve flow with the SRB through client plug-in in the Workbench that allows interactions with the SRB with a robust file management UI • Incorporate view in Workbench for start, parameter entry, and status views to provide complete workbench solution • Package all pieces as Eclipse plug-ins • Improve error handling and reporting within internal operation of workflow software. • Make ROCKs build • Complete the support for data provenance as currently specified • Add ontology of workflows to BIRNLex • Finalize and provide documentation for: • creating the application wrapper • creating additions to the workflow ontology • storing results in the workflows database Biomedical Informatics Research Network

  5. Release workflow for gradient distortion correction algorithm that requires proprietary spherical harmonic information • Assure that LONI pipelines can be run through the workflow portal Biomedical Informatics Research Network

  6. BIRN Workflow Workbench Allows direct creation of jBPM workflows Displays and control workflow progress Allow robust uploading to SRB Scalable to include results analysis with NCBC software Eclipse plug-ins SRB Client GAMA Web Server SRB Client FIPS SRB (File Repository) jBPM Interface WF driver (client) WF driver (server) Tomcat Server GridSphere LONI Interface WF portlet DB upload download Request Form Status of Request Check on Status Final Report BIRN Portal or task status start Biomedical Informatics Research Network

  7. Biomedical Informatics Research Network

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  9. Integration with Upload Goals • Upload of image files (only) to SRB built into current BIRN Workflow manager. • Server-sided clinical data management may be modeled after NIH NCBC project. Biomedical Informatics Research Network

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  17. BIRNWorkflow Portal Biomedical Informatics Research Network

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