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Bioinformatics for Vet. Part I

This course offers a comprehensive introduction to bioinformatics tailored for veterinary students. It covers fundamental topics such as DNA and protein sequence analysis, similarity searches, and phylogenetic tree construction. Through engaging lectures and practical assignments, students will learn how to utilize various bioinformatics tools and databases. Grading consists of homework, midterm testing, a final exam, and attendance. Resources include access to prominent bioinformatics databases and tools. Join us to expand your knowledge and skills in bioinformatics, enhancing your veterinary practice.

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Bioinformatics for Vet. Part I

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  1. Bioinformatics for Vet. Part I Sung Youn Lee, PhD. Student Veterinary collage, Room 320 02 450 3719, 016 293 6059 leevet@paran.com

  2. Course Overview • Syllabus – Tentative schedule • Books • Structure of class • Grading

  3. Syllabus-Tentative schedule • Introduction to class • what bioinformatics can do for you • How most people use bioinformatics • Using sequence database • Working with a single DNA sequence • Working with a single protein sequence • Similarity search • Comparing • Protein structure • Working with RNA • Building phylogenetic tree

  4. Books Image Source: http://www.amazon.com/

  5. Books Image Source: http://www.amazon.com/

  6. Books Image Source: http://www.amazon.com/

  7. Structure of class • Introduction of topic • Available tools • Give answers

  8. Grading • Homework(2~) 25% • Midterm test 25% • Final test 30% • Attendance 20%

  9. Resouces • Medline : http://www.pubmed.com • SWISS-PROT : http://au.expasy.org/sprot • BLAST : http://www.ncbi.nlm.nih.gov/BLAST/ • BioTools : http://biotools.umassmed.edu/ • Molecular Toolkit : http://arbl.cvmbs.colostate.edu/molkit/ • Genescan : http://genes.mit.edu/GENSCAN.html • Dotlet : http://www.isrec.isb-sib.ch/java/dotlet/Dotlet.html • RCSB PBD : http://www.rcsb.org/pdb/ • Mfold : http://www.bioinfo.rpi.edu/applications/mfold/old/rna/ • ClustalW : http://www.ebi.ac.uk/clustalw/

  10. Thank you for your attention ~

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