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Markov Chain Monte Carlo

Markov Chain Monte Carlo

Markov Chain Monte Carlo. Prof. David Page transcribed by Matthew G. Lee. Markov Chain. A Markov chain includes A set of states A set of associated transition probabilities

By giles
(230 views)

Methods for Evaluating the Performance of Diagnostic Tests in the Absence of a “Gold Standard:” A Latent Class Model A

Methods for Evaluating the Performance of Diagnostic Tests in the Absence of a “Gold Standard:” A Latent Class Model A

Methods for Evaluating the Performance of Diagnostic Tests in the Absence of a “Gold Standard:” A Latent Class Model Approach. Elizabeth S. Garrett Division of Biostatistics Johns Hopkins University December 9, 2002. Evaluating Diagnostic Criteria.

By ziva
(140 views)

Longitudinal Latent Class Models with Application to Outcomes for Bipolar Disorder

Longitudinal Latent Class Models with Application to Outcomes for Bipolar Disorder

Longitudinal Latent Class Models with Application to Outcomes for Bipolar Disorder. January 24, 2008. Motivating Case Study: The STEP-BD Study . “Systematic Treatment Enhancement Program”. Longitudinal, multi-site study of ~ 3700 patients diagnosed with Type-I and Type-II bipolar disorder

By gus
(172 views)

A Non-Parametric Bayesian Method for Inferring Hidden Causes

A Non-Parametric Bayesian Method for Inferring Hidden Causes

A Non-Parametric Bayesian Method for Inferring Hidden Causes. by F. Wood, T. L. Griffiths and Z. Ghahramani. Discussion led by Qi An ECE, Duke University. Outline. Introduction A generative model with hidden causes Inference algorithms Experimental results Conclusions. Introduction.

By kasen
(69 views)

Nonparametric hidden Markov models

Nonparametric hidden Markov models

Nonparametric hidden Markov models. Jurgen Van Gael and Zoubin Ghahramani. Introduction. HM models: time series with discrete hidden states Infinite HM models ( iHMM ): nonparametric Bayesian approach Equivalence between Polya urn and HDP interpretations for iHMM

By adolph
(167 views)

Discrete Choice Modeling

Discrete Choice Modeling

William Greene Stern School of Business New York University. Discrete Choice Modeling. 5. Bayesian Econometrics. Bayesian Estimation. Philosophical underpinnings: The meaning of statistical information How to combine information contained in the sample with prior information.

By kaveri
(62 views)

Decision Analysis for Risk (and Reliability ) Basic concepts and some open problems

Decision Analysis for Risk (and Reliability ) Basic concepts and some open problems

Decision Analysis for Risk (and Reliability ) Basic concepts and some open problems. David Ríos Insua david.rios@urjc.es Royal Academy of Sciences , Spain Belgirate , May ‘11. Goals.

By milo
(138 views)

Bayesian Nonparametric Classification and Applications

Bayesian Nonparametric Classification and Applications

Department of Electrical and Computer Engineering. Zhu Han Department of Electrical and Computer Engineering University of Houston. Thanks to Nam Nguyen , Guanbo Zheng , and Dr. Rong Zheng. Bayesian Nonparametric Classification and Applications. Bayesian Nonparametric Classification.

By rio
(99 views)

Summary

Summary

Interpretable Latent Feature Models For Text-Augmented Social Networks. James R. Foulds , Padhraic Smyth University of California, Irvine. The Nonparametric Latent Feature Relational Model (Miller et al., 2009) Actor i represented by a binary vector of features Z i

By perdy
(53 views)

Priors, Normal Models, Computing Posteriors

Priors, Normal Models, Computing Posteriors

Priors, Normal Models, Computing Posteriors. st5219 : Bayesian hierarchical modelling lecture 2.4. An all purpose sampling tool. Monte Carlo: requires knowing the distribution---often don’t

By zytka
(83 views)

Image Modeling - continued

Image Modeling - continued

Image Modeling - continued. Given observed feature statistics { H (a) obs }, we associate an energy with any image I as Then the corresponding Gibbs distribution is The q ( I ) can be sampled using a Gibbs sampler or other Markov chain Monte-Carlo algorithms. Image Modeling - continued.

By shlomo
(77 views)

Computing the Marginal Likelihood

Computing the Marginal Likelihood

Computing the Marginal Likelihood. David Madigan. Bayesian Criterion. Typically impossible to compute analytically All sorts of Monte Carlo approximations. Laplace Method for p ( D | M ). (i.e., the log of the integrand divided by n ). Laplace’s Method:. Laplace cont.

By verlee
(111 views)

Score Function for Data Mining Algorithms

Score Function for Data Mining Algorithms

Score Function for Data Mining Algorithms. Based on Chapter 7 of Hand, Manilla, & Smyth David Madigan. Introduction. e.g. how to pick the “best” a and b in Y = aX + b usual score in this case is the sum of squared errors Scores for patterns versus scores for models

By garima
(225 views)

Gibbs sampler - simple properties

Gibbs sampler - simple properties

Gibbs sampler - simple properties. It’s not hard to show that this MC chain is aperiodic. Often is reversible distribution.

By caelan
(111 views)

T cell Epitope predictions using bioinformatics (Neural Networks and hidden Markov models)

T cell Epitope predictions using bioinformatics (Neural Networks and hidden Markov models)

T cell Epitope predictions using bioinformatics (Neural Networks and hidden Markov models). Morten Nielsen, CBS, BioCentrum, DTU. Processing of intracellular proteins. MHC binding. http://www.nki.nl/nkidep/h4/neefjes/neefjes.htm. What makes a peptide a potential and effective epitope?.

By teenie
(156 views)

Setting Up a Replica Exchange Approach to Motif Discovery in DNA

Setting Up a Replica Exchange Approach to Motif Discovery in DNA

Setting Up a Replica Exchange Approach to Motif Discovery in DNA . Jeffrey Goett Advisor: Professor Sengupta. RNA polymerase. Binding Proteins. Regulation. Transcription. Binding sites. gene. Translation to Proteins. Protein Synthesis from DNA. Binding Site. Binding protein “A”.

By geoff
(121 views)

Ocean Ecosystem Model Parameter Estimation in a Bayesian Hierarchical Model (BHM)

Ocean Ecosystem Model Parameter Estimation in a Bayesian Hierarchical Model (BHM)

Ocean Ecosystem Model Parameter Estimation in a Bayesian Hierarchical Model (BHM). Ralph F. Milliff ; CIRES, University of Colorado Jerome Fiechter , Ocean Sciences, UC Santa Cruz Christopher K. Wikle , Statistics, University of Missouri. Radu Herbei , Statistics, Ohio State Univ.

By quasim
(99 views)

Presentation By Lara DePadilla

Presentation By Lara DePadilla

A Presentation of ‘Bayesian Models for Gene Expression With DNA Microarray Data’ by Ibrahim, Chen, and Gray. Presentation By Lara DePadilla. Goal. To “develop a novel class of parametric statistical models for analyzing DNA microarray data’.

By garson
(142 views)

Gibbs Sampler in Local Multiple Alignment

Gibbs Sampler in Local Multiple Alignment

Gibbs Sampler in Local Multiple Alignment. Review by 온 정 헌. Topic. 하나 . Gibbs Sampler algorithm in Multiple Sequence Alignment ( 기전 설명 ) (Lawrence et al., Science 1993; J. Liu et al. JASA, 1995)

By emilie
(195 views)

Project list

Project list

Project list. Peptide MHC binding predictions using position specific scoring matrices including pseudo counts and sequences weighting clustering (Hobohm) techniques Peptide MHC binding predictions using artificial neural networks with different sequence encoding schemes

By vernon-beasley
(72 views)

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