'Rooted trees' diaporamas de présentation

TREES

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Bioinformatics

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Chapter 7 Building Phylogenetic Trees

Chapter 7 Building Phylogenetic Trees. Contents. Phylogeny Phylogenetic trees How to make a phylogenetic tree from pairwise distances UPGMA method (+ an example) Neighbor-Joining method (+ an example) Comparison of methods Conclusion. Phylogeny.

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Introduction to evolution and phylogeny Nomenclature of trees Four stages of molecular phylogeny:

Molecular Phylogenetics. Introduction to evolution and phylogeny Nomenclature of trees Four stages of molecular phylogeny: [1] selecting sequences [2] multiple sequence alignment [3] tree-building [4] tree evaluation Practical approaches to making trees. Introduction.

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Intro. To Phylogenetic Analysis

Intro. To Phylogenetic Analysis. Slides modified by David Ardell From Caro-Beth Stewart, Paul Higgs, Joe Felsenstein and Mikael Thollesson. What is phylogenetic analysis and why should we perform it? Phylogenetic analysis has two major components:

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Phylogenetic Analysis

Phylogenetic Analysis. Phylogenetic Analysis Overview. Insight into evolutionary relationships Inferring or estimating these evolutionary relationships shown as branches of a tree Length and nesting reflects degree of similarity between any two items (in our case, sequences).

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Frequent Structure Mining

Frequent Structure Mining. Robert Howe University of Vermont Spring 2014. Original Authors. This presentation is based on the paper Zaki MJ (2002). Efficiently mining frequent trees in a forest. Proceedings of the 8th ACM SIGKDD International Conference .

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Phylogenetic Analysis based on two talks, by

Phylogenetic Analysis based on two talks, by. Caro-Beth Stewart, Ph.D . Department of Biological Sciences University at Albany, SUNY c.stewart@albany.edu and Tal Pupko, Ph.D. Faculty of Life Science Tel-Aviv University talp@post.tau.ac.il.

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Phylogenetic Analysis

Phylogenetic Analysis. Caro-Beth Stewart, Ph.D . Associate Professor Department of Biological Sciences University at Albany, SUNY Albany, New York 12222 c.stewart@albany.edu.

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Phylogenetic Trees Lecture 11

Phylogenetic Trees Lecture 11. Sections 7.1, 7.2, in Durbin et al. Evolution. Evolution of new organisms is driven by Diversity Different individuals carry different variants of the same basic blue print Mutations

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What is phylogenetic analysis and why should we perform it?

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Phylogenetic Trees Lecture 11

Phylogenetic Trees Lecture 11. Sections 7.1, 7.2, in Durbin et al. Evolution. Evolution of new organisms is driven by Diversity Different individuals carry different variants of the same basic blue print Mutations

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Modified Mincut Supertrees

Modified Mincut Supertrees. Roderic Page University of Glasgow. Tree of Life. About 1.7 million species described. What we have so far: TreeBASE database (15,000 taxa) Ribosomal Database Project (RDP II) (20,000 sequences) The Tree of Life Project (11,000 taxa).

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Phylogeny Tree Reconstruction

1. 4. 3. 5. 2. 5. 2. 3. 1. 4. Phylogeny Tree Reconstruction. Final Exam. 24-hour, takehome exam More straight-forward questions than in homeworks Please email Michael and Serafim by Friday, with your preference of day to take exam

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Summarising Sets of Phylogenies

Summarising Sets of Phylogenies. Consensus Trees and Split/Consensus Networks. Aidan Budd EMBL Heidelberg Friday July 2nd 2010 Basic Molecular Evolution Workshop: 1 - 2 July 2010 BecA-ILRI Hub, Nairobi, Kenya. Part 2. Causes of Split Incompatibility.

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Trees

Trees. Chapter 11. Chapter Summary. Introduction to Trees Applications of Trees ( not currently included in overheads ) Tree Traversal Spanning Trees Minimum Spanning Trees ( not currently included in overheads ). Introduction to Trees. Section 11.1. Section Summary.

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? Natural Vegetation & Climate ?

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More Trees

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Rooted Trees

Rooted Trees. More definitions. root. internal vertex. descendants of g. ancestor of d. leaf. parent of d. child of c. subtree. sibling of d.

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