'Sequence assembly' diaporamas de présentation

Genome sequence assembly concepts and methods Shih-Jon Wang May 13, 2008

Genome sequence assembly concepts and methods Shih-Jon Wang May 13, 2008. OUTLINE. Assembly Process Overview Assembly algorithms Repeats Scaffolding Phred/Phrap/Consed Assembly pipelines. Assembly process overview. A Genome Sequencing Project. Building a Library.

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Sequence Assembly and Protein Docking Algorithms

Sequence Assembly and Protein Docking Algorithms. Vicky Choi Department of Computer Science Duke University. Outline. Sequence Assembly Algorithm (Joint work with Martin Farach-Colton @Rutgers)

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Genomics and Personalized Care in Health Systems Lecture 10. High Throughput Technologies

Genomics and Personalized Care in Health Systems Lecture 10. High Throughput Technologies. Leming Zhou, PhD School of Health and Rehabilitation Sciences Department of Health Information Management. Outline. Polymerase Chain Reaction (PCR) Genome Sequencing Microarray Pathway Analysis.

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Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. The sequence assembly problem Several general approaches Related graph problems Hamiltonian path Eulerian path Sequence assembly by using de Bruijn graphs. Part 1.

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Overview of Cloud Technologies and Parallel P rogramming F rameworks for Scientific Applications

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Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. The sequence assembly problem Several general approaches Related graph problems Hamiltonian path Eulerian path Sequence assembly by using de Bruijn graphs. Part 1.

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NGS Bioinformatics Workshop 2.1 Next Generation Sequencing and Sequence Assembly Algorithms

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Sequence Alignment I Lecture #2

Sequence Alignment I Lecture #2. Background Readings : Gusfield, chapter 11. Durbin et. al., chapter 2.

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The Role of Algorithmic Research in Computational Genomics

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High Performance Biomedical Applications Using Cloud Technologies

High Performance Biomedical Applications Using Cloud Technologies . Judy Qiu xqiu@indiana.edu www.infomall.org/s a lsa Community Grids Laboratory Pervasive Technology Institute Indiana University. HPC and Grid Computing in the Cloud Workshop (OGF27 ) October 13, 2009, Banff Canada.

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RNA Sequence Assembly

RNA Sequence Assembly. WEI Xueliang. Overview. Sequence Assembly Current Method My Method RNA Assembly To Do. Sequence Assembly. Goal : get the DNA/RNA sequence. Machine cannot read whole genomes in one go, but rather small pieces between 20 and 1000 bases. Define: Read = Tag = Fragment.

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PineRefSeq : Conifer Reference Genome Sequencing

PineRefSeq : Conifer Reference Genome Sequencing. An Adaptive Approach to the Sequencing of the Large Genomes of Multiple Conifer Species. U. California-Davis, CHORI, Johns Hopkins U., U. Maryland, Indiana U., Texas A&M U., Washington State U. Supported by USDA NIFA AFRI. PineRefSeq.

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Sequence Assembly for Single Molecule Methods

Sequence Assembly for Single Molecule Methods. Steven Skiena, Alexey Smirnov Department of Computer Science SUNY at Stony Brook {skiena, alexey}@cs.sunysb.edu. The State of Sequence Assembly.

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Sequence Assembly for Single Molecule Methods

Sequence Assembly for Single Molecule Methods. Steven Skiena, Alexey Smirnov Department of Computer Science SUNY at Stony Brook {skiena, alexey}@cs.sunysb.edu. The State of Sequence Assembly.

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Whole genome scans to localise QTL

Whole genome scans to localise QTL. X. QTL to gene. Likely position. QTL. Chromosome with mapped markers. BAC Contig Spanning QTL region. New Markers. Candidate Genes. Test by association. Fine Mapping. Use in MAS. Identification of putative functional variations. Sequencing.

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Assembly

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Twister4Azure : Iterative MapReduce for Azure Cloud

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