1 / 15

Efficient Utilization of GEO Datasets for Hepatoma Cell Lines Analysis

Explore and analyze hepatoma cell lines with GEO datasets. Access samples and profiles via NCBI for in-depth research on HCC and controls.

tonya
Télécharger la présentation

Efficient Utilization of GEO Datasets for Hepatoma Cell Lines Analysis

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. How to use GEO

  2. GEO datasets • Go to http://www.ncbi.nlm.nih.gov/ • Select ‘GEO datasets’ • Keyword : Hepatoma cell lines, homo

  3. GSE8351

  4. GSE, GPL, GSM GPL GSM

  5. GPL5452 – view full table

  6. 67 samples - mainly HCC samples

  7. Sample GSM206985

  8. G000002 0.065540587 • G000003 0.053925988 • G000004 0.031904168

  9. Search GEO datasets for “GSE3536” Title : Hepatoma cell lines vs. Universal control 3

  10. GSE3536

  11. GPL2913 – view full table

  12. 36 samples

  13. GSM81024 HepG2 vs. Universal control 5

  14. GEO Profiles - http://www.ncbi.nlm.nih.gov/ Step2:在此鍵入你所想收尋之關鍵字如: GATA6 (gene name ) AND "Homo Sapiens" [ORGN] AND GDS596 (Accession) Step1:選擇GEO Profiles

  15. Search result 可點進去看tissue分佈 查詢後，有些得出許多結果，依user所要的資料去選擇，用基因所對應的NM編號來選。

More Related