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ODIP: Establishing and operating an ocean data interoperability platform

ODIP: Establishing and operating an ocean data interoperability platform. Helen Glaves (NERC- BGS), Dick Schaap (MARIS), Robert Arko (LDEO) and Roger Proctor (IMOS). Paradigm shift from traditional discipline based marine research

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ODIP: Establishing and operating an ocean data interoperability platform

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  1. ODIP: Establishing and operating an ocean data interoperability platform Helen Glaves (NERC- BGS), Dick Schaap (MARIS), Robert Arko (LDEO) and Roger Proctor (IMOS)

  2. Paradigm shift from traditional discipline based marine research • Multidisciplinary ecosystem level approach: promoted in Europe by Marine Strategy Framework directive MSFD (2008) and Marine Knowledge 2020 • Requires large amounts of good quality, interoperable data from a range of disciplines and organisations

  3. Barriers to re-use of marine data • Use of different • Formats • Standards • Best practice • Co-ordinate systems • Technologies • National and organisational data access policies

  4. Europe Australia USA E-infrastructures • A number of regional initiatives have made significant progress in addressing these barriers by developing marine data management infrastructures • Development of these infrastructures is being promoted and supported by international organizations such as UNESCO‘s Intergovernmental Oceanographic Commission (IOC)

  5. Ocean Data Interoperability Platform EU-US-Australia collaborative project Grant Number: 312492 Call: FP7-INFRASTRUCTURES-2012-1-INFSO Activity: INFRA-2012-3.2: International co-operation with the USA on common e-infrastructure for scientific data Start date: 1 October 2012 Duration: 36 months Funded in parallel by European Commission, National Science Foundation (NSF) and Australian Government

  6. ODIP partners Europe: 10 EU funded partners: 6 countriesNERC-BGS/BODC, MARIS, OGS, IFREMER, HCMR, ENEA, ULG, CNR, RBINS-MUMM, TNO

  7. USA: NSF funded partners (supplement to existing R2R project) • San Diego Supercomputer Center (SDSC) • Scripps Institution of Oceanography (SIO) • Woods Hole Oceanographic Institute (WHOI) • Lamont-Doherty Earth Observatory (LDEO) • Florida State University: Center for Ocean-Atmospheric Prediction Studies (FSU) Australia • University of Tasmania (IMOS) International • UNESCO IOC-IODE

  8. Associate partners • Europe • Alfred Wegener Institute for Polar Research (AWI) • MARUM • USA • NOAA US-IOOS, NOAA US-NODC, NOAA NGDC • UNIDATA • Australia • Australian National Data Service (ANDS) • Geoscience Australia (GA) • CSIRO

  9. ODIP: Objectives • To establish an EU/USA/Australia/IOC-IODE co-ordination platform to facilitate the interoperability of ocean and marine data management infrastructures • To demonstrate this co-ordination through the development of several joint prototype interoperability solutions that allows effective sharing of marine and ocean data across scientific domains, organisations and national boundaries • Development of a common approach to marine data management that can be extended to other regions and organisations beyond the original project consortium

  10. Overall strategy Development of a collaboration platform to facilitate organised dialogue between key organisations in Europe, USA and Australia involved with marine data management. Achieved by: • Creating inventories of existing standards and policies • Publication of these existing standards and best practice through ODIP portal and Research Data Alliance • Regular joint workshops to develop interoperability solutions and/or agree on common standards • Development of prototypes for testing and evaluating potential interoperability solutions • Dissemination /promotion of ODIP activities to encourage wider participation and adoption of the outcomes of the project

  11. Progress to date………. • 1st ODIP workshop: Ostende, Belgium (February 2013) • Addressed 6 discussion topics • Resulted in an extensive list of actions • Formulated into three prototype interoperability solution development tasks • 2nd ODIP workshop: San Diego, USA (December 2013) • Addressed three discussion topics and implementation plans for the prototype development tasks • Initiation of 3 prototype interoperability solution development tasks

  12. ODIP 1: objective • Establishing interoperability between the SeaDataNet, IMOS and NODC data discovery and access services using brokering services • Lead by European partners via SeaDataNet • Initially addressing use of brokers at the metadata level • Progress to data access services (possibly including authentication and authorisation systems)

  13. ODIP 1: the plan • make use of the (Euro)GEOSS Brokerage harmonise the 3 regional services to a common level • SeaDataNet (Europe) • IMOS (Australia) • NODC (USA) • start at metadata level, but progress to data access, including providing solutions for possible AAA systems • use the broker to facilitate access to data from the regional services by the GEOSS and Ocean Data Portals

  14. ODIP 2: objective • ODIP 2: Establishing interoperability between cruise summary reporting systems in Europe, the USA and Australia • Lead by Rolling Deck to Repository (R2R) partners (USA) • Improvement of delivery and exchange of cruise summary information through the use of common formats and vocabularies • Use of GeoNetWorks for routine harvesting of cruise data for delivery via the Partnership for Observation of Global Oceans (POGO) portal

  15. ODIP 2: the plan • Publish ISO Cruise Summary Reports at regional nodes: • Marine National Facility (Australia) • SeaDataNet (Europe) • R2R (USA) • Deploy GeoNetwork catalogues at regional nodes providing both a GUI (web portal) and API (CSW service) • Harvest GeoNetwork nodes into POGO global catalogue

  16. ODIP 3: objective • Establishment of a prototype for a Sensor Observation Service (SOS) for selected sensors installed on vessels and in real-time monitoring systems using sensor web enablement (SWE) • Lead by AODN (Australia) • regional initiatives progress towards the adoption of SWE allowing direct standardised access to the data from operational sensor systems

  17. ODIP 3: the plan • establish a collaboration tool (Github) • compile inventory of SOS services and their endpoints • compile inventory of instrument SensorML records & O&M structures • compile inventory of vocab and registry services • Working groups to assess SOS performance • propose templates for SensorML/StarFl and O&M profiles • examine vocabulary services and potential mappings • Set-up a test bed

  18. ODIP 3: the plan • Establish a collaboration tool • Github: https://github.com/aodn/ODIP • compile inventory of SOS services and their endpoints • compile inventory of instrument SensorML records & O&M structures • compile inventory of vocab and registry services • Working groups to • assess SOS performance • propose templates for SensorML/StarFl and O&M profiles • examine vocab services and potential mappings • Set up testbed

  19. StarFL OGC discussion document *FL Starfish Fungus Language for Sensor Description http://portal.opengeospatial.org/files/?artifact_id=44438

  20. Testbed - Progress so far… (Scott Bainbridge) • Set up two public open SOS servers, one running V4.0 of the 52North SOS server, the other running V3.6; • Both servers are fully open, that is anyone can undertake the full SOS set of requests including registering sensors and adding data; • Currently data from the IMOS FAIMMS Sensor Network is going into the servers, more data can be added to look at load testing if need be; • Both servers form an ideal platform for client development and service chaining experiments.

  21. SOS v4.0 • Base Address: http://115.146.93.169:8080/IMOS-SOS/ • XML Address: http://115.146.93.169:8080/IMOS-SOS/sos/pox/ • So far two Features of Interest: • IMOS/DAVIES/SF1 = Sensor Float 1 at Davies Reef • IMOS/HERON/RP8 = Relay Pole 8 at Heron Island • With two Parameters: • Water temperature (Deg. C.) • Depth (m)

  22. SOS v3.6 • Base Address: http://130.220.209.177:8080/IMOS-SOS-36/ • XML Address: http://130.220.209.177:8080/IMOS-SOS-36/sos/ • Will be set up with the same Features of Interest and Parameters as the V4 server; • Supports both SOS V1 and SOS V2.

  23. Activities underway • SeaDataNet (Jordi Sorribas) SensorML_profiles_for_specific_ marine_observations_data-final.pdf Example: RONIMAR program station located in Cadiz with a tide gauge. SensorML (using the SensorML2.0 schema) and O&M files are online: http://www.utm.csic.es/SensorWeb/Descriptions

  24. Activities underway • CNR(Alessandro Oggioni, Mauro Bastianini, Cristiano Fugazza) VMs with 52°North SOS implementations: a) version 3.2 linked to some data streams from the Venice Acqua Alta Tower b) version 4.0 linked to some data streams from the LTER ecological data (also for 5 marine stations) c) version 4.0 linked to the tidal network stations Examples of SensorML for version 3.x and 4.0: a) weather stations; b) vessel sensors; c) probe profile (eg CTD) An inventory of SOS: collected 420 SOS endpoints (site to share this list?) A SOS client to upload metadata (SensorML format) and Observations, visualize (also in realtime), and download data from the sensors ‘Starter’ kit

  25. Activities underway • OGS (Elena Partescano, Alessandra Giorgetti) Testing a SOS service linked to the meteo-oceanographic MAMBO1 buoy (in the North Adriatic Sea) and the observatory site E2M3A (in the South Adriatic Sea) Installed a OGC 52° North Sensor Observation Service 3.5 (http://nodc.ogs.trieste.it/SOS/sos) and a SOSClient (http://nodc.ogs.trieste.it/SOSclient) For testing: MAMBO1 - all CTD and pH sensors – and E2M3A - pH sensor - (pH data for both buoys, stored using O&M format). The SensorML 1.0 are compiled using, where possible, the SeaDataNet vocabularies and EDIOS catalog.

  26. Activities underway • AWI (Hans Pfeiffenberger, Ana Macario) Research vessel SOS • SensorML and O&M SeaDataNet profiles are being adopted – lots of work! • AWI hands-on experience will be communicated in next ODIP workshop • AWI is also keen on testing StarFL • SensorML and O&M will be „opened“ for RV Polarstern and RV Heincke during Q1/2015 Dynamic vessel tracking • On-going efforts towards integration in EUROFLEETS 2 prototype Cooperation with 52North (SOS 4.0) is planned • Optimization of current near real time services

  27. Activities underway • Ifremer (Thomas Loubrieu, MickaelTreguer) Made some progress on oceanotron which now implements SOS protocol. Output is encoded in XML, JSON, and netCDF. It works for online results or off-line (or asynchronous) results for big volumes. Working together with Jordi Sorribason templates of sensorML and O&M and shared core rules on them (on vocabulary's references,unique identifiers, contacts, ...) Doing some experimentation with 52north.

  28. Activities underway • US-IOOS (Derrick Snowden) All IOOS regions now have functioning IOOS milestone 1.0 SOS services in place. Strongly urging to adopt the 52North 4.0 branch as the basis for ODIP. Inventory of SOS services and endpoints - https://www.ngdc.noaa.gov/docucomp/collectionSource/list?recordSetId=&componentId=&serviceType=SOS&serviceStatus=&serviceUrl=&search=List+Collection+Sources Inventory of sensorML and O&M structures - https://code.google.com/p/ioostech/source/browse/#svn%2Ftrunk%2Ftemplates%2FMilestone1.0 Vocab and registry services – http://mmisw.org/ont/ioos

  29. Activities underway Two test instances of 52N and ncSOS (four services - latest stable build and continuous integration build) 52N: http://ioossos.axiomalaska.com/ ncSOS: https://github.com/asascience-open/ncSOS/wiki#wiki-quick-links Test data sets for further development: For ncsos - https://github.com/asascience-open/ncSOS/blob/master/resources/datasets.zip For IOOS 52N - http://ioossos.axiomalaska.com/testdata.html An early version of a python client for the IOOS SOS profile (and several other web service interfaces): https://github.com/asascience-open/pyoos

  30. Activities underway • BODC (Justin Buck) Planning to implement a prototype ncSOS system for glider data at BODC (based on IOOS but need to integrate access control).

  31. What next? • Use github repository to • compile inventory of SOS services and their endpoints • compile inventory of instrument SensorML records & O&M structures • compile inventory of vocab and registry services • Initiate Working groups to • assess SOS performance • Justin Buck, Scott Bainbridge • propose templates for SensorML/StarFl and O&M profiles • Paolo Diviacco, Irina Bastrakova, Thomas Loubrieu*, Cristiano Fugazza*, Hans Pfeiffenberger* • examine vocab services and potential mappings • Kim Finney / Sebastien Mancini, Cristiano Fugazza • Add more SOS to testbed, add more datasets

  32. In time for ODIP#3 workshop • When? 4-8 August 2014 • Where? Australian Institute of Marine Science, Townsville, Australia Townsville will be warm and sunny in August, max around  26C., min around 14C Participation: http://doodle.com/ziazg939u7wbypkw Accommodation: IBIS TOWNSVILLE HOTEL (“AIMS0814”)

  33. Thank you!

  34. Dissemination of ODIP outcomes • Project website • Social media • International conferences • Other related initiatives • Ocean Data Portal (ODP) • Research Data Alliance • Belmont Forum www.odip.eu

  35. Github repository Users requesting to be registered for Github Paulo Diviacco - pdiviacco@ogs.trieste.it Thomas Loubrieu (tloubrieu) - Thomas.Loubrieu@ifremer.fr MickaelTreguer (mtreguer) - Mickael.Treguer@ifremer.fr Kim Finney - kimtfinney@gmail.com Scott Bainbridge - s.bainbridge@aims.gov.au Alessandro Oggioni - oggioni.a@irea.cnr.it Mauro Bastianini - mauro.bastianini@ismar.cnr.it Cristiano Fugazza - fugazza.c@irea.cnr.it Justin Buck - juck@bodc.ac.uk Ana Macario - Ana.Macario@awi.de Derrick Snowden - derrick.snowden@noaa.gov Jordi Sorribas - sorribas@cmima.csic.es Dominic Lowe - D.Lowe@bom.gov.au Elena Partescano - epartescano@ogs.trieste.it

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