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Pathway Team

Pathway Team. SNU, IDB Lab. DongHyuk Im DongHee Lee. Introduction. OASIS System. RDF storage, RDBMS. GO Annotation DB (UniProt). PubMed. Blast DB. GO annotation. Biomedical Literature. Sequence matching. Subcellular Localization DB. PPI DB. KEGG pathway. Molecular function.

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Pathway Team

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  1. Pathway Team SNU, IDB Lab. DongHyuk Im DongHee Lee

  2. Introduction • OASIS System RDF storage, RDBMS GO Annotation DB(UniProt) PubMed Blast DB GO annotation Biomedical Literature Sequence matching SubcellularLocalization DB PPI DB KEGG pathway Molecular function Cellular component Biological process

  3. Pathway ? • Most chemical reaction mechanisms are translated from a compound(substrate) to a compound(product) by enzyme acting • Importance • to comparison and analyze pathways in order to understand the process of creating compounds and the evolutive relevance between organisms • Drug Discovery enzyme substrate product EC relation

  4. Pathway : Map Map : *Glycolysis / Gluconeogenesis Map : E. coli * Glycolysis : 당분해

  5. Our Approach : RDF based Pathway Database Database User User Link-based Integrated Common format and integrated DB will make data more accessible

  6. System Architecture : R-Pathway Visualization Pathway UI Query Processor Processor for integrating Enzyme GO Pathway

  7. Pathway Data : KGML

  8. KGML RDF Mapping

  9. RDF based Pathway

  10. Gene Search

  11. GO-to-Pathway Search pathway using GO information

  12. Comaparison to KEGG Pathway Prediction (1/2) KEGG Pathway Integrated Pathway possible path Show matching pathway

  13. Comaparison to KEGG Pathway Prediction (2/2) KEGG pathway Integrated pathway Our pathway can show the path results with integrated information in order

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