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Workflow Template Generation

Workflow Template Generation. Haw to. Steps. Hand Made Preparation. Make proper set of WF examples on Portal Save it to a local directory Decompress it Make a Template Directory of it (TD) Define the Table of Actual Parameters TAP

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Workflow Template Generation

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  1. Workflow Template Generation Haw to

  2. Steps Hand Made Preparation • Make proper set of WF examples on Portal • Save it to a local directory • Decompress it • Make a Template Directory of it (TD) • Define the Table of Actual Parameters TAP • Apply the Macro Generator to gain Destination DirectoryMG( TD,TAP) -> DD • Apply the Directory Compress And Upload Program • Start the Submit All Command on the Portal

  3. What should be parameter?

  4. Where are these Parameter? • <wf>_files.wrk -> <wf_dest>_files.wrk<wf_dest>,<ri>,<fi,j> • <JOB>.grid<voi> • .<JOB>.desc<voi>,<ri> • <JOB>/<JOB>.jdl <voi>,<ri>,<fi,j>,<ei>

  5. Resource RemoteFile <wf>_files.wrk workflow "<<wf_dest>>" {"MultipLOC" 2 "MultipRemLoc" 1 OFFLINE "Copyrem" 1 "MultipLOC" 1 OFFLINE} {"Copyrem" SEQ_PORTAL (is_instrumented=false;monitor=off) "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/Copyrem/CopyAndTime" {""}"LINUX" {"<<r1>>"} 0 "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/Copyrem/0/INPUT" (file_type=local;original_path="D:\A-TEST\I1") PERMANENT INPUT 1 "<<f11>>" (file_type=remote;local_path="/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/OUTPUT") PERMANENT OUTPUT"MultipLOC" SEQ_PORTAL (is_instrumented=false;monitor=off) "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/MultipLOC/multiply.exe" {""}"LINUX" {"<<r2>>"} 0 "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/MultipLOC/0/INPUT1" (file_type=local;original_path="D:\A-TEST\I1") PERMANENT INPUT 1 "<<f21>>" (file_type=remote;local_path="/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/INPUT2") PERMANENT INPUT 2 "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/MultipLOC/2/OUTPUT" (file_type=local;original_path="OUTPUT") PERMANENT OUTPUT "MultipRemLoc" SEQ_PORTAL (is_instrumented=false;monitor=off) "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/MultipRemLoc/multiply.exe" {""}"LINUX" {"<<r3>>"} 0 "<<f31>>" (file_type=remote;local_path="/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/INPUT1") PERMANENT INPUT 1 "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/MultipRemLoc/1/INPUT2" (file_type=local;original_path="") PERMANENT INPUT 2 "/home/krisztian/pgportal/portal_work/users/hermann/<<wf_dest>>_files/MultipRemLoc/2/OUTPUT" (file_type=local;original_path="OUTPUT") PERMANENT OUTPUT} New FW name

  6. <JOB>.grid <<vo1>>

  7. <JOB>.desc hermann Indirect_REMOTE_Template Copyrem <<vo1>><<r1>> false

  8. <JOB>/<JOB>.jdl [ VirtualOrganisation = "<<vo1>>"; Executable = "Copyrem.sh"; JobType = "Normal"; StdOutput = "std.out"; StdError = "std.err"; InputSandbox = {"CopyAndTime", "Copyrem.sh","0/INPUT", "info.tar.gz" }; OutputSandbox = {"std.out", "std.err", "std.log"}; OutputData = { [ OutputFile = "OUTPUT"; LogicalFileName = "<<f11>>“ ] }; Environment = {<<e1>>}; RetryCount = 3; Requirements = other.GlueCEInfoHostname == "<<r1>>"; ]

  9. Table of Actual Parameters

  10. Haw To Generate Tab ? • Fill the Excell Table • When Save as, select Type : Text(Tab delimited)

  11. Haw to call the Macro Generator ? public WorkflowMacroFactory(String templateDirPath, String tapDirPath, String destinationDir, boolean toUNIX) A test main program calls this by default parameters: new WorkflowMacroFactory( "d:\\A_A_WorkflowRepository\\TEMPLATES\\DecompressedTemplates", "d:\\A_A_WorkflowRepository\\TEMPLATES\\TAP_newComplex.txt", "d:\\A_A_WorkflowRepository\\TOM", false); External call: Java – Gener.jar <TD> <TAP> <DD>

  12. Apply the Directory Compress And Upload Program • Under construction • Temporary problems:- Zip –Unzip sensitive to OS- Upload should bypass WF Editor, because SAVE operation of WE overwrites <JOB>/<JOB>.jdl files

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