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map. S. pneumoniae Uncertain S. pseudopneumoniae S. mitis Unknown A IgA1 protease negative S. oralis S. oligofermentans “S. mitis biovar 2” S. oralis S. infantis S. peroris S. australis S. parasanguinis S. cristatus S. sinensis S. sanguinis S. gordonii S. intermedius

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  1. map S. pneumoniae Uncertain S. pseudopneumoniae S. mitis Unknown A IgA1 protease negative S. oralis S. oligofermentans “S. mitis biovar 2” S. oralis S. infantis S. peroris S. australis S. parasanguinis S. cristatus S. sinensis S. sanguinis S. gordonii S. intermedius S. constellatus S. anginosus S. vestibularis S. thermophilus S. salivarius Unknown B S. agalactiae S. pyogenes Figure S1-A

  2. pfl 0.05 Figure S1-B

  3. ppaC Figure S1-C

  4. pyk Figure S1-D

  5. rpoB Figure S1-E

  6. sodA Figure S1-F

  7. tuf 0.05 Figure S1-G

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