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ATP

Making energy!. ATP. The point is to make ATP !. The energy needs of life. Organisms are endergonic systems What do we need energy for? synthesis building biomolecules reproduction movement active transport temperature regulation. Where do we get the energy from?.

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ATP

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  1. Making energy! ATP The pointis to makeATP!

  2. The energy needs of life • Organisms are endergonic systems • What do we need energy for? • synthesis • building biomolecules • reproduction • movement • active transport • temperature regulation

  3. Where do we get the energy from? • Work of life is done by energy coupling • use exergonic (catabolic) reactions to fuel endergonic (anabolic) reactions digestion energy + + synthesis energy + +

  4. high energy bonds ATP • Adenosine TriPhosphate • modified nucleotide • nucleotide =adenine + ribose + Pi AMP • AMP + Pi ADP • ADP + Pi ATP • adding phosphates is endergonic How efficient! Build once,use many ways

  5. O– O– O– O– O– O– O– O– P P P P P P P P –O –O –O O– O– O– –O –O –O O– O– O– –O –O O– O– O O O O O O O O I thinkhe’s a bitunstable…don’t you? How does ATP store energy? • Each negative PO4 more difficult to add • a lot of stored energy in each bond • most energy stored in 3rd Pi • 3rd Pi is hardest group to keep bonded to molecule • Bonding of negative Pi groups is unstable • spring-loaded • Pi groups “pop” off easily & release energy ADP AMP ATP Instability of its P bonds makes ATP an excellent energy donor

  6. O– O– O– O– P P P P –O O– –O O– –O –O O– O– O O O O How does ATP transfer energy? • ATP  ADP • releases energy • ∆G = -7.3 kcal/mole • Fuel other reactions • Phosphorylation • released Pi can transfer to other molecules • destabilizing the other molecules • enzyme that phosphorylates = “kinase” 7.3energy + ADP ATP

  7. enzyme + + H H H H H H H H H2O C C C C C C C C OH OH HO HO O O + H ATP ADP + C H H P HO OH H C C + + Pi C P An example of Phosphorylation… • Building polymers from monomers • need to destabilize the monomers • phosphorylate! synthesis +4.2 kcal/mol “kinase”enzyme It’snever thatsimple! -7.3 kcal/mol -3.1 kcal/mol

  8. P ATP C 2 hexokinase C 2 ADP phosphofructokinase H C P Another example of Phosphorylation… • The first steps of cellular respiration • beginning the breakdown of glucose to make ATP glucose C-C-C-C-C-C Thosephosphatessure make ituncomfortablearound here! fructose-1,6bP P-C-C-C-C-C-C-P DHAP P-C-C-C G3P C-C-C-P activationenergy

  9. + Pi ATP / ADP cycle ATP • Can’t store ATP • good energy donor, not good energy storage • too reactive • transfers Pi too easily • only short term energy storage • carbohydrates & fats are long term energy storage cellularrespiration 7.3 kcal/mole ADP A working muscle recycles over 10 million ATPs per second Whoa!Pass methe glucose (and O2)!

  10. Cells spend a lot of time making ATP! Thepoint is to makeATP! What’s thepoint?

  11. Cellular RespirationHarvesting Chemical Energy ATP

  12. Harvesting stored energy • Energy is stored in organic molecules • carbohydrates, fats, proteins • Heterotrophs eat these organic molecules  food • digest organic molecules to get… • raw materials for synthesis • fuels for energy • controlled release of energy • “burning” fuels in a series of step-by-step enzyme-controlled reactions

  13. glucose + oxygen  energy + water + carbon dioxide respiration ATP + 6H2O + 6CO2 + heat  C6H12O6 + 6O2 COMBUSTION = making a lot of heat energy by burning fuels in one step ATP glucose O2 O2 fuel(carbohydrates) Harvesting stored energy • Glucose is the model • catabolism of glucose to produce ATP RESPIRATION = making ATP (& some heat)by burning fuels in many small steps ATP enzymes CO2 + H2O + heat CO2 + H2O + ATP (+ heat)

  14. + + oxidation reduction e- How do we harvest energy from fuels? • Digest large molecules into smaller ones • break bonds & move electrons from one molecule to another • as electrons move they “carry energy” with them • that energy is stored in another bond, released as heat or harvested to make ATP loses e- gains e- oxidized reduced + – e- e- redox

  15. e p loses e- gains e- oxidized reduced + – + + H oxidation reduction H  C6H12O6 + 6O2 6CO2 + 6H2O + ATP H How do we move electrons in biology? • Moving electrons in living systems • electrons cannot move alone in cells • electrons move as part of H atom • move H = move electrons oxidation reduction e-

  16. oxidation  C6H12O6 + 6O2 6CO2 + 6H2O + ATP reduction Coupling oxidation & reduction • REDOX reactions in respiration • release energy as breakdown organic molecules • break C-C bonds • strip off electrons from C-H bonds by removing H atoms • C6H12O6CO2 =thefuel has been oxidized • electrons attracted to more electronegative atoms • in biology, the most electronegative atom? • O2H2O =oxygen has been reduced • couple REDOX reactions & use the released energy to synthesize ATP O2

  17. Oxidation adding O removing H loss of electrons releases energy exergonic Reduction removing O adding H gain of electrons stores energy endergonic oxidation  C6H12O6 + 6O2 6CO2 + 6H2O + ATP reduction Oxidation & reduction

  18. O– O– O– O– P P P P –O –O –O –O O– O– O– O– O O O O NAD+ nicotinamide Vitamin B3 niacin O O H H C C NH2 C C NH2 N+ N+ reduction + H oxidation phosphates adenine ribose sugar Moving electrons in respiration • Electron carriers move electrons by shuttling H atoms around • NAD+NADH (reduced) • FAD+2FADH2 (reduced) reducing power! NADH H carries electrons as a reduced molecule

  19. Phosphorylation • SUBSTRATE LEVEL • ADP receives a phosphate directly from another molecule (a phosphorylated intermediate) • OXIDATIVE • Oxidation of substrate releases energy; energy is used to create ATP through ATP synthase

  20. C6H12O6 + 6O2 ATP + 6H2O + 6CO2 Overview of cellular respiration • 4 metabolic stages • Anaerobic respiration 1. Glycolysis • respiration without O2 • in cytosol • Aerobic respiration • respiration using O2 • in mitochondria 2. Pyruvate oxidation 3. Krebs cycle 4. Electron transport chain (+ heat)

  21. Cellular RespirationStage 1:Glycolysis

  22. What’s thepoint? The pointis to makeATP! ATP

  23. Where does it occur? • The process of glycolysis occurs within the cell . . . but where? • Glucose enters the cell through the plasma membrane (facilitated diffusion) • Once it gets in the cell, glycolysis occurs within the cytoplasm • Enzymes will couple with the glucose to enact all the necessary steps

  24. glucose      pyruvate 6C 3C 2x Glycolysis • Breaking down glucose • “glyco – lysis” (splitting sugar) • ancient pathway which harvests energy • where energy transfer first evolved • transfer energy from organic molecules to ATP • still is starting point for ALL cellular respiration • but it’s inefficient • generate only2 ATP for every 1 glucose • occurs in cytosol In thecytosol?Why doesthat makeevolutionarysense? That’s not enoughATP for me!

  25. Evolutionary perspective Enzymesof glycolysis are“well-conserved” • Prokaryotes • first cells had no organelles • Anaerobic atmosphere • life on Earth first evolved withoutfree oxygen (O2) in atmosphere • energy had to be captured from organic molecules in absence of O2 • Prokaryotes that evolved glycolysis are ancestors of all modern life • ALL cells still utilize glycolysis You meanwe’re related?Do I have to invitethem over for the holidays?

  26. enzyme enzyme enzyme enzyme enzyme enzyme enzyme enzyme ATP ATP 4 2 4 2 2 ADP NAD+ ADP 2Pi 2 2H 2Pi glucose C-C-C-C-C-C Overview 10 reactions • convert glucose (6C)to 2 pyruvate (3C) • produces:4 ATP & 2 NADH • consumes:2 ATP • net yield:2 ATP & 2 NADH fructose-1,6bP P-C-C-C-C-C-C-P DHAP P-C-C-C G3P C-C-C-P pyruvate C-C-C DHAP = dihydroxyacetone phosphate G3P = glyceraldehyde-3-phosphate

  27. Glycolysis summary endergonic invest some ATP ENERGY INVESTMENT -2 ATP G3P C-C-C-P exergonic harvest a little ATP & a little NADH ENERGY PAYOFF 4 ATP like $$in the bank • net yield • 2 ATP • 2 NADH NET YIELD

  28. 1st half of glycolysis (5 reactions) CH2OH Glucose “priming” O Glucose 1 ATP hexokinase • get glucose ready to split • phosphorylate glucose • molecular rearrangement • split destabilized glucose ADP CH2 O P O Glucose 6-phosphate 2 phosphoglucose isomerase CH2 P O CH2OH O Fructose 6-phosphate 3 ATP phosphofructokinase P O CH2 CH2 O P O ADP Fructose 1,6-bisphosphate aldolase 4,5 H O CH2 P isomerase C O C O Dihydroxyacetone phosphate Glyceraldehyde 3 -phosphate (G3P) CHOH CH2OH CH2 O P NAD+ Pi NAD+ Pi 6 glyceraldehyde 3-phosphate dehydrogenase NADH NADH P O O CHOH 1,3-Bisphosphoglycerate (BPG) 1,3-Bisphosphoglycerate (BPG) CH2 O P

  29. 2nd half of glycolysis (5 reactions) DHAP P-C-C-C G3P C-C-C-P Energy Harvest • NADH production • G3P donates H • oxidizes the sugar • reduces NAD+ • NAD+ NADH • ATP production • G3P    pyruvate • PEP sugar donates P • “substrate level phosphorylation” • ADP  ATP Pi Pi NAD+ NAD+ 6 NADH NADH 7 ADP ADP O- phosphoglycerate kinase C ATP ATP CHOH 3-Phosphoglycerate (3PG) 3-Phosphoglycerate (3PG) CH2 P O 8 O- phosphoglycero-mutase O C H C O P 2-Phosphoglycerate (2PG) 2-Phosphoglycerate (2PG) CH2OH O- 9 H2O H2O enolase C O O C P Phosphoenolpyruvate (PEP) Phosphoenolpyruvate (PEP) CH2 O- 10 ADP ADP C O pyruvate kinase Payola!Finally some ATP! ATP ATP C O CH3 Pyruvate Pyruvate

  30. O- 9 H2O H2O enolase C O O C P Phosphoenolpyruvate (PEP) Phosphoenolpyruvate (PEP) CH2 O- 10 ADP ADP C O pyruvate kinase ATP ATP C O CH3 Pyruvate Pyruvate Substrate-level Phosphorylation • In the last steps of glycolysis, where did the P come from to make ATP? • the sugar substrate (PEP) • P is transferred from PEP to ADP • kinase enzyme • ADP  ATP ATP I get it! The Pi camedirectly fromthe substrate!

  31. 2 ATP 2 ADP 2 NAD+ 4 ADP ATP 4 2 Energy accounting of glycolysis • Net gain = 2 ATP + 2 NADH • some energy investment (-2 ATP) • small energy return (4 ATP + 2 NADH) • 1 6C sugar 2 3C sugars glucose      pyruvate 6C 3C 2x All that work! And that’s all I get? Butglucose hasso much moreto give!

  32. O2 O2 O2 O2 O2 3C 2x Is that all there is? • Not a lot of energy… • for 1 billon years+ this is how life on Earth survived • no O2 = slow growth, slow reproduction • only harvest 3.5% of energy stored in glucose • more carbons to strip off = more energy to harvest glucose     pyruvate 6C Hard wayto makea living!

  33. DHAP G3P NAD+ Pi NAD+ Pi NADH NADH 1,3-BPG 1,3-BPG Pi Pi NAD+ NAD+ 6 NADH NADH 7 ADP ADP ATP ATP 3-Phosphoglycerate (3PG) 3-Phosphoglycerate (3PG) 8 2-Phosphoglycerate (2PG) 2-Phosphoglycerate (2PG) 9 H2O H2O Phosphoenolpyruvate (PEP) Phosphoenolpyruvate (PEP) 10 ADP ADP ATP ATP Pyruvate Pyruvate But can’t stop there! • Going to run out of NAD+ • without regenerating NAD+,energy production would stop! • another molecule must accept H from NADH • so NAD+ is freed up for another round raw materialsproducts Glycolysis glucose + 2ADP + 2Pi + 2 NAD+2pyruvate+2ATP+2NADH

  34. recycleNADH How is NADH recycled to NAD+? without oxygen anaerobic respiration “fermentation” with oxygen aerobic respiration Another molecule must accept H from NADH pyruvate NAD+ H2O CO2 NADH NADH O2 acetaldehyde NADH acetyl-CoA NAD+ NAD+ lactate lactic acidfermentation which path you use depends on who you are… Krebs cycle ethanol alcoholfermentation

  35. O2 O2 Pyruvate is a branching point Pyruvate fermentation anaerobicrespiration mitochondria Krebs cycle aerobic respiration

  36. H+ H+ H+ H+ H+ H+ H+ H+ + P H+ And how do we make ATP? • ATP synthase • set up a H+ gradient • allow H+ to flow through ATP synthase • powers bonding of Pi to ADP ADP + PiATP ADP ATP But… Have we done that yet?

  37. ATP ATP 2 4 2 2 4 NAD+ ADP ADP 2Pi 2 2Pi 2H glucose C-C-C-C-C-C Glycolysis Overview 10 reactions • convert glucose (6C)to 2 pyruvate (3C) • produces:4 ATP & 2 NADH • consumes:2 ATP • net:2 ATP & 2 NADH fructose-1,6bP P-C-C-C-C-C-C-P DHAP P-C-C-C G3P C-C-C-P pyruvate C-C-C

  38. Cellular RespirationStage 2 & 3:Oxidation of Pyruvate Krebs Cycle

  39. glucose      pyruvate 6C 3C 2x pyruvate       CO2 Glycolysis is only the start • Glycolysis • Pyruvate has more energy to yield • 3 more C to strip off (to oxidize) • if O2 is available, pyruvate enters mitochondria • enzymes of Krebs cycle complete the full oxidation of sugar to CO2 3C 1C

  40. Cellular respiration

  41. outer membrane intermembrane space inner membrane cristae matrix mitochondrialDNA Mitochondria — Structure • Double membrane energy harvesting organelle • smooth outer membrane • highly folded inner membrane • cristae • intermembrane space • fluid-filled space between membranes • matrix • inner fluid-filled space • DNA, ribosomes • enzymes • free in matrix & membrane-bound What cells would have a lot of mitochondria?

  42. Oooooh!Form fits function! Mitochondria – Function Dividing mitochondria Who else divides like that? Membrane-bound proteins Enzymes & permeases bacteria! Advantage of highly folded inner membrane? More surface area for membrane-bound enzymes & permeases What does this tell us about the evolution of eukaryotes? Endosymbiotic Theory!

  43. [ ] 2x pyruvate  acetyl CoA + CO2 NAD Oxidation of pyruvate • Pyruvate enters mitochondrial matrix • 3 step oxidation process • releases 2 CO2(count the carbons!) • reduces 2NAD  2 NADH (moves e-) • produces 2acetyl CoA • Acetyl CoA enters Krebs cycle 1C 3C 2C Wheredoes theCO2 go? Exhale!

  44. NAD+ 2 x [ ] Pyruvate oxidized to Acetyl CoA reduction Acetyl CoA Coenzyme A CO2 Pyruvate C-C C-C-C oxidation Yield = 2C sugar + NADH + CO2

  45. 1937 | 1953 Krebs cycle • aka Citric Acid Cycle • in mitochondrial matrix • 8 step pathway • each catalyzed by specific enzyme • step-wise catabolism of 6C citrate molecule • Evolved later than glycolysis • does that make evolutionary sense? • bacteria 3.5 billion years ago (glycolysis) • free O22.7 billion years ago (photosynthesis) • eukaryotes 1.5 billion years ago (aerobic respiration = organelles  mitochondria) Hans Krebs 1900-1981

  46. 2C 6C 5C 4C 3C 4C 4C 4C 4C 6C CO2 CO2 Count the carbons! pyruvate acetyl CoA citrate oxidationof sugars This happens twice for each glucose molecule x2

  47. 2C 6C 5C 4C 3C 4C 6C 4C 4C 4C NADH ATP CO2 CO2 CO2 NADH NADH FADH2 NADH Count the electron carriers! pyruvate acetyl CoA citrate reductionof electroncarriers This happens twice for each glucose molecule x2

  48. Whassup? So we fully oxidized glucose C6H12O6  CO2 & ended up with 4 ATP! What’s the point?

  49. H+ H+ H+ H+ H+ H+ H+ H+ H+ Electron Carriers = Hydrogen Carriers • Krebs cycle produces large quantities of electron carriers • NADH • FADH2 • go to Electron Transport Chain! ADP+ Pi ATP What’s so important about electron carriers?

  50. 4 NAD+1 FAD 4 NADH+1FADH2 2x 1C 3x 1 ADP 1 ATP Energy accounting of Krebs cycle Net gain = 2 ATP = 8 NADH + 2 FADH2 pyruvate          CO2 3C ATP

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