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Motif discovery in co-regulated genes

Motif discovery in co-regulated genes

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Motif discovery in co-regulated genes

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  1. Motif discovery in co-regulated genes Jeremy Glasner Genetics 875 December 7, 2007 www.biostat.ucsf.edu/cbmb/bmi209.fall05/fall2004/lectures/bmi209-lecture9.pdf

  2. Transcriptional regulatory regions (cis regulatory elements)

  3. From microarrays to regulatory networks www.biostat.ucsf.edu/cbmb/bmi209.fall05/fall2004/lectures/bmi209-lecture9.pdf

  4. Position specific scoring matrices to describe motifs www.biostat.ucsf.edu/cbmb/bmi209.fall05/fall2004/lectures/bmi209-lecture9.pdf

  5. Finding sites with a PSSM www.biostat.ucsf.edu/cbmb/bmi209.fall05/fall2004/lectures/bmi209-lecture9.pdf

  6. de novo stochastic motif finding www.biostat.ucsf.edu/cbmb/bmi209.fall05/fall2004/lectures/bmi209-lecture9.pdf

  7. Statistical solutions to the missing data problem www.biostat.ucsf.edu/cbmb/bmi209.fall05/fall2004/lectures/bmi209-lecture9.pdf

  8. Identification of regulatory sequences by phylogenetic conservation Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W217-21