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Batch Analysis Planning

Batch Analysis Planning. Motivation. Run offline processes to enable biomarker qualification, validation, etc. What is Batchmake?. Scripting language for constructing processing pipelines Output to Condor DAG scripts. No processing built-in No statistics/analysis built-in. What is LSTK?.

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Batch Analysis Planning

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  1. Batch Analysis Planning

  2. Motivation • Run offline processes to enable biomarker qualification, validation, etc.

  3. What is Batchmake? • Scripting language for constructing processing pipelines • Output to Condor DAG scripts. • No processing built-in • No statistics/analysis built-in

  4. What is LSTK? • Lesion-Sizing Toolkit • Baseline segmentation algorithms • Test Application will be run using Batchmake on a set of data from Midas (imported from NBIA

  5. What is AVT? • Tools for algorithm validation • Baseline segmentation • Result analysis (using GNU R) • Batch processing? • GUI Only?

  6. Planning/Goals * Demonstrator with LSTK modules run via Batchmake (Semi-Automated) * Apr. 22, 2010 Digital Archiving with MIDAS

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