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GO/PO interconnections

GO/PO interconnections. Tanya Berardini GO Ontology Developer TAIR Annotator. GO terms with PO references. Biological Process: esp. Developmental Process Ex. flower development Cellular Component Ex. root hair tip. Prot égé 4.3. GO logical definitions using PO. Biological Process

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GO/PO interconnections

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  1. GO/PO interconnections Tanya Berardini GO Ontology Developer TAIR Annotator

  2. GO terms with PO references • Biological Process: esp. Developmental Process • Ex. flower development • Cellular Component • Ex. root hair tip

  3. Protégé 4.3

  4. GO logical definitions using PO • Biological Process [Term] id: GO:0009908 ! flower development subset: goslim_plant intersection_of: GO:0048856 ! anatomical structure development intersection_of: RO:0002296 PO:0009046 ! results in development of flower • Cellular Component [Term] id: GO:0035619 ! root hair tip intersection_of: GO:0044463 ! cellprojection part intersection_of: BFO:0000050 PO:0025164 ! part_of root epidermalcell

  5. Current Status • 152 logical definitions in file that is separate from the main GO

  6. Future Plans • Integrate GO/PO logical definitions into main GO file • Add a new TermGenie template/s for PO-related GO terms • go.termgenie.org • TG templates will facilitate automatic placement of such terms in the GO hierarchy based on existing related GO terms and the current PO structure • Changes in the PO will be reflected by changes in the related GO terms, if such changes are necessary

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