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Cassava Needs

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shay
8 diapositives · 558 Views · Aug 07, 2014

Cassava Needs. Cassava needs. Best model for analysis to minimize heterogeneity in non-uniform stress differences – correcting for sources of variation Tracking most efficient haplotype combinations. Rice CI need for IBP. Genotype at least two MARS populations through IBP

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Cassava Needs
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  1. Cassava Needs

  2. Cassava needs • Best model for analysis to minimize heterogeneity in non-uniform stress differences – correcting for sources of variation • Tracking most efficient haplotype combinations

  3. Rice CI need for IBP • Genotype at least two MARS populations through IBP • Expand the use of handheld • Train researchers on SNP data analysis • Make MARS decision support tools available through training • Train researchers on analysis and decision support tools • Make softwares related to analytical and decision support tools available to project members through training

  4. Most Urgent Needs for cowpea • Analysis & Decision Support tools • Cross prediction and selection methodology • Decision support tools • Logistics and data management • Pedigree Information Management • Transition to LIMS, Bar coding • Preparing NARS scientists for using these tools • Pilot MARS data available now • Main MARS phenotypic data in Nov. ISMAB - ICRISAT/GCP-IBP

  5. What help do we need from IBP (or anyone else)? • R-based tools for routine breeding analysis in Fieldbook-IMIS • We need to make sure that the 5-6 most important breeding analyses are bundled in the fieldbook using R, and run well on small laptops. • Easy retrospective analysis of long-term trial databases, link to environmental data. • We need good interfaces and graphics • Support for migration from spreadsheets to a breeding informatics system • Pipeline for sequence -> called alleles for GBS. • Geo-referenced estimation of plot residuals for local error control!!

  6. Rice STRASA Future needs • High throughput, automated and cheaper genotyping • services • Enough information and support to apply new breeding • methodologies • Large scale drought screening facilities in wet season • Enough support to disseminate the newly released • varieties

  7. IBP needs for wheat CI Genotyping – need cost effective SNP access now for both Indian & Chinese MARS materials Data management in India using ICIS has begun. Limited in China due to Chinese script and no history of usage.

  8. Urgent Needs from IBP • Finalisation of integration of FIELDBOOK • Training on R in FIELDBOOK • Access to Marker Services • Assistance in establishment of DNA extraction facilities • Provision of consultancy to enhance uptake of novel technologies?