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Schematic Representation of Domains in Rice Class I Clp ATPases

This study presents a comprehensive schematic representation of various domains found in rice class I Clp ATPases, specifically focusing on the alignment of proteins with respect to the first nucleotide-binding domain (NBD1). Utilizing the SMART database, we visualize important features such as OsClpB, OsClpC, and OsClpD family members, alongside associated signal peptides for plasma membrane, mitochondria, and chloroplast targeting. The findings contribute to the understanding of domain structures and potential functional implications in rice ATPases.

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Schematic Representation of Domains in Rice Class I Clp ATPases

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  1. OsClpB-m OsClpB-c OsClpB-cyt OsClpC1 OsClpC2 OsClpC3 OsClpC4 OsClpD1 OsClpD2 Signal peptide- plasma membrane Signal peptide- mitochondria Signal peptide- chloroplast Spacer sequence NBD1 NBD2 ClpN UVR Additional file 3: Schematic representation of various domains present in rice class I Clp ATPases. The proteins were aligned with respect to first NBD. SMART database was used to visualize the domains.

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