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  1. SeqViewer AraCyc Help Part II

  2. SeqViewer: TAIR’s genome browser • Visualization of the whole Arabidopsis genome and its associated annotations • BAC, gene, transcript, polymorphism, T-DNA insertion, marker • Can go down to the individual nucleotide level

  3. SeqViewer

  4. SeqViewer

  5. Search in SeqViewer

  6. Search result

  7. SeqViewer closeup view

  8. Seqviewer closeup view

  9. SeqViewer nucleotide view

  10. SeqViewer nucleotide view

  11. AraCyc: Biochemical pathways of Arabidopsis • Search, browse and visualize pathways, compounds, enzymes and genes • Overlay large scale Omics data on the metabolic pathway network

  12. AraCyc

  13. AraCyc: search by name

  14. AraCyc: compound detail page

  15. AraCyc: compound detail page (cont.)

  16. AraCyc: pathway detail page

  17. AraCyc: download genes of a pathway

  18. AraCyc: pathway detail page

  19. AraCyc: enzyme detail page

  20. AraCyc: OmicsViewer • Overlay gene expression data • Overlay proteomics data • Overlay metabolite profiling data • and other experimental data

  21. Step 2 Upload input file tab-delimited text file OmicsViewer submission page Step 1

  22. Step 4 Step 5 Step 6 OmicsViewer submission page (cont.) Step 3

  23. OmicsViewer submission page (cont.) Step 7

  24. OmicsViewer submission page (cont.) Step 8 Step 9

  25. Zoom-in OmicsViewer results

  26. Saving results

  27. Getting help using TAIR resource • Help Central • Help for specific tools (e.g. searches, BLAST etc) • Glossary of terms in TAIR • FAQ • Tutorials • Email support via curator@arabidopsis.org. We try to respond within 24 hours. • Special requests for data

  28. Help central

  29. Help central

  30. AraCyc tutorial

  31. Help central

  32. TAIR glossary

  33. TAIR glossary

  34. Contact us by email

  35. Special requests for data • All putative proteins • A list of loci with experimentally verified known functions • A list of gene name and alias • …