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Raw reads

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Raw reads

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  1. Accession Number (taxonomy) KEGG (pathway) Raw reads BLASTN (nt / env_nt) Done for brine, 1500m and 50m. Done for brine. BLASTX (nr / env_nr) Protein (function) Matched Unmatched KEGG Accession Number (taxonomy) Subtractions (BLASTN + BLASTP/X or TBLASTX) Done for brine, 1500m and 50m. Pfam PhyMM BLASTN done for brine, 1500m and 50m. Domains (prot. families) Pfam GO Comparisons to HOT/ALOHA and Mediterranean Brine Pools (accession subtraction or sequence subtraction ??) GO (onthology) X Shaheen / CBRC Analysis will be performed using Workstations / CBRC SGI / AUC Time-logic / VBI

  2. KEGG (pathway) Assembly ORFs ORFfinder Running for brine. BLASTX (nr / env_nr) Protein (function) Matched Unmatched Accession Number (taxonomy) Pfam PhyMM Running for brine. Domains Pfam Comparisons to HOT/ALOHA and Mediterranean Brine Pools (accession subtraction or sequence subtraction ??) GO Running for brine. GO (onthology) Shaheen / CBRC Analysis will be performed using Workstations / CBRC SGI / AUC Time-logic / VBI