'Expression analysis' diaporamas de présentation

GO-based tools for functional modeling

GO-based tools for functional modeling. TAMU GO Workshop 17 May 2010. Functional Modeling. Grouping by function GO Slim sets GO browser tools GOSlimViewer Expression analysis DAVID EasyGO/agriGO Onto-Express Funcassociate 2.0 Pathway & network analysis.

581 views • 43 slides

Bioinformatics and Machine Learning

Bioinformatics and Machine Learning. Contents. What is Bioinformatics ? Why Bioinformatics ? Problems in Bioinformatics Machine Learning Methods ML Methods for Bio Data Mining Terminologies in Bioinformatics Bioinformatics in Korea. What is Bioinformatics ? (1).

1.97k views • 43 slides

AFFYMETRIX SNP chips

AFFYMETRIX SNP chips. Karin Dahlman-Wright Department of Biosciences and BEA Karolinska Institutet. Agenda. Introduction AFFYMETRIX technology DNA analysis products www.affymetrix.com. Introduction. Milestones in Affymetrix history. Affymetrix Japan KK. Commercial Launch.

2.26k views • 42 slides

BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment

BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment. Youngik Yang, Jong Youl Choi, Kwangmin Choi, Marlon Pierce, Dennis Gannon, and Sun Kim School of Informatics Indiana University. CONTENTS. Introduction Approach Related Works Microarray technology System Architecture

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Chromatin Immunoprecipitation and the Chip on Chip technique.

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CLINICAL GENOMICS CENTRE PROTEOMICS GROUP

Who we are?. CLINICAL GENOMICS CENTRE PROTEOMICS GROUP. What do we do?. How do we do it fast?. simplified procedure. Cloning in 96 format. Genomic DNA. Amplification with proofreading Pol ( Pfx ). PCR product. Restriction. Purification. T7. His-tag. Tev cleavage site. HM. GS.

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Mining Biomedical Data

Mining Biomedical Data. Vipin Kumar University of Minnesota kumar@cs.umn.edu www.cs.umn.edu/~kumar. Mining Biomedical Data. Recent technological advances are helping to generate large amounts of clinical and genomic data Biological data sets Gene & protein sequences; Microarray data;

741 views • 26 slides

Introduction to Bioinformatics

Introduction to Bioinformatics. The Swiss Institute of Bioinformatics. Collaborative structure Lausanne - Geneva Groups at ISREC, Ludwig Institute, CHUV, Unil, HUG, UniGe, and recently UniBas Several roles: research, services, teaching DEA (master degree) in Bioinformatics: 1 year full time.

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Introduction to Bioinformatics

Introduction to Bioinformatics. The Swiss Institute of Bioinformatics. Collaborative structure Lausanne - Geneva Groups at ISREC, Ludwig Institute, CHUV, Unil, HUG, UniGe, and recently UniBas Several roles: research, services, teaching DEA (master degree) in Bioinformatics: 1 year full time.

510 views • 25 slides

Introduction to Bioinformatics

Introduction to Bioinformatics. The Swiss Institute of Bioinformatics. Collaborative structure Lausanne - Geneva Groups at ISREC, Ludwig Institute, CHUV, Unil, HUG, UniGe, and recently UniBas Several roles: research, services, teaching DEA (master degree) in Bioinformatics: 1 year full time.

402 views • 25 slides

Rhizome Project Meeting(2) 5-4-2011

Rhizome Project Meeting(2) 5-4-2011. Min- Jeong Kim Gang Lab Institute of Biological Chemistry Washington State University Pullman, WA. Why Johnsongrass ?. Johnsongrass. www.usda.gov. Distribution of Johnsongrass. www.usda.gov. Work Flow. Total RNA. cDNA synthesis.

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Test system for systems biology

Test system for systems biology. Four distinct types of global datasets were generated and analyzed Proteome analysis quantitative proteomics (ICAT technology) to analyze 300 proteins in wild-type yeast with the system turned on and off

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ChipDB: An interactive database system for high-throughput expression analysis

ChipDB: An interactive database system for high-throughput expression analysis. Peter Young, John Barnett, Bing Ren, Ezra Jennings and Richard Young Whitehead Institute for Biomedical Research. Expression analysis. motivation objectives analysis architecture data mining platform

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GO Annotation from different sources

GO Annotation from different sources. Secondary Sources of GO annotation. EXAMPLES: public databases (eg. NCBI, UniProtKB) genome browsers (eg. Ensembl) array vendors (eg. Affymetrix) CONSIDERATIONS: What is the original source? When was it last updated?

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Global Common Subexpression Elimination

Global Common Subexpression Elimination. Available Expression Analysis Eliminating CSEs. Global Common Subexpression. Available Expression. Availability of an expression E at point P Definition: Along every path to P in the flow graph: E must be evaluated at least once

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LP HP

Full title of paper: A comparison study of Agrobacterium -mediated transformation methods for root-specific promoter analysis in soybean Journal name: Plant Cell Reports (PCR) Authors name: Caifeng Li, Haiyan Zhang, Xiurong Wang* and Hong Liao

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PAL

PAL. CHS. CHR. IFR. COMT.

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M Leeb & A Wutz Nature 000 , 1 - 4 (2011) doi:10.1038/nature10448

Expression analysis of haploid ES cells. M Leeb & A Wutz Nature 000 , 1 - 4 (2011) doi:10.1038/nature10448.

76 views • 1 slides