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Online Mendelian Inheritance in Skin: Enhancing OMIM Database Access

This project proposal outlines the development of an online database focused on Mendelian inheritance specifically related to skin genetic disorders. The Online Mendelian Inheritance in Man (OMIM) serves as a primary resource, yet it has limitations regarding the availability of skin-related genetic disorder data. This proposal includes methods for data extraction using Python and database management with MS Access. The goal is to create a user-friendly interface that simplifies the search for genetic disorders in skin, enhancing accessibility and understanding while acknowledging existing limitations.

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Online Mendelian Inheritance in Skin: Enhancing OMIM Database Access

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  1. Term Project Proposal Presentation 2006. 06. 12

  2. Database : Online Mendelian Inheritance in skin with OMIM DB

  3. Introduction Online Mendelian Inheritance in Man (OMIM) OMIM is a continuously updated catalogue of human genes and genetic disorders. OMIM focuses primarily on inherited, or heritable, genetic diseases. It is considered to be a phenotypic companion to the human genome project. OMIM is based upon the text Mendelian Inheritance in Man, authored and edited by Dr. Victor A. McKusick and a team of science writers and editors at Johns Hopkins University and elsewhere. Mendelian Inheritance in Man(MIM) is now in its 12th edition. See McKusick, V.A.: Mendelian Inheritance in Man. 12th ed., Baltimore: Johns Hopkins University Press, 1998.

  4. Purpose - Limitation of datas about skin genetic disorders in OMIM - the updated data in other databases is considerably insufficient. OMIK(Online Mendlian Inheritance in Korea) : information is simple and Page error 국립보건원<유전질환 DB> : late update Korea Cytogenetic DB : page error - All of the database is not up to date ( old ) - Databases include overlapped cytogenetic DB - contents of the databases are insufficient for professional and accuracy

  5. Method OMIM Get id from html pages(/omimhtml) ( skin search ) Method : python 2.4 Searched results with skin : 2189 Raw data Download the pages(/omimsubhtml) with id Method : python 2.4 html data Extract the datas from downloaded pages Method : python 2.4

  6. Method extracted data insert datas (text file)to the data table Method : MS Access !! but except data if data is too large to insert to the table Data table Make form for the table Method : MS Access form Coding to add search function with visual basic Method : MS Access (visual basic) Skin DB

  7. Result search Title OMIM id

  8. Result In the Searched data If click the OMIMlink, If click the Genelocus,

  9. Discussion - Skin database can be used to search genetic disorders in skin. - The information in this database is easier to see and understand through visualization datas and picture informations than previous OMIM DB. - DB is not linked to the web. - But this skin DB have limitations.  Most part of the information in DB exist in OMIM DB.  Earning the pictures about genetic disorder is difficult. ( shortage of knowledge)

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