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Genetic Diversity Analysis Using UPGMA Tree Based on Allelic Profiles of Various STs

This research employs the Unweighted Pair Group Method with Arithmetic Mean (UPGMA) to construct a phylogenetic tree. The study analyzes genetic relationships by assessing allele differences among various sequence types (STs), including NT-477 (ST1), NT-M6593 (ST46), and others. This representation aids in visualizing genetic diversity and evolutionary relationships within populations, providing insights into the structure of genetic variation across different STs.

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Genetic Diversity Analysis Using UPGMA Tree Based on Allelic Profiles of Various STs

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  1. UPGMA tree based on differences in the allelic profiles of the STs NT-477 (ST1) NT-M6593 (ST46) + NT-432 (ST40) NT-375 (ST3) NT-723 (ST14) + NT-1247 (ST33) NT-1124 (ST12) + NT-1158 (ST11) + NT-1159 (ST11) + NT-981 (ST42) NT-1008 (ST43) + NT-1180 (ST2) NT-1181 (ST2) NT-1292 (ST2) + NT-162 (ST37) NT-667 (ST57) * A-RM7205 (ST4) B4 A-RM7416 (ST4) B1b * B-M6588 (ST45) B-M6589 (ST45) B-M6755 (ST45) B-RM7414 (ST50) A-RM1042 (ST5) A-RM7190 (ST23) B2 A-RM7191 (ST23) * A-RM7031 (ST56) A-RM7032 (ST56) A-RM7198 (ST56) D-RM6137 (ST10) D-RM7033 (ST10) D-RM7271 (ST48) D-RM7429 (ST49) * D-RM1168 (ST47) B1f/B1g D-RM6150 (ST47) D-RM8039 (ST47) + D-Rd (ST47) NT-486 (ST41) C-RM7270 (ST7) C-RM7424 (ST7) * C-RM1167 (ST9) C-RM1271 (ST9) C-RM6132 (ST19) C-RM7267 (ST51) C-RM6134 (ST8) D/E C-RM7422 (ST8) C-RM8032 (ST58) F-RM6252 (ST15) * F-RM6255 (ST16) F-RM6237 (ST16) F-RM6244 (ST16) K/L F-RM7283 (ST26) F-RM7298 (ST26) F-RM7290 (ST29) F-RM7417 (ST63) E-RM6181 (ST17) E-RM7423 (ST32) E-RM6229 (ST18) E-RM6185 (ST18) E-RM7280 (ST18) E-RM1018 (ST66) E-RM8031 (ST69) E-RM6167 (ST67) F/G E-RM6210 (ST68) * E-RM6169 (ST27) * E-RM7066 (ST28) E-RM6158 (ST52) I1 * A-RM6062 (ST20) A-RM6069 (ST20) J3 A-RM6080 (ST20) * A-RM7115 (ST62) * B-RM1324 (ST61) A-RM6064 (ST21) A-RM6068 (ST30) A-RM6070 (ST59) A-RM6073 (ST25) H1 A-RM6083 (ST60) B-M6596 (ST6) B-M6597 (ST6) B-M6598 (ST6) B-M6599 (ST6) B-M6600 (ST6) B-M6612 (ST6) B-M6613 (ST6) B-M6614 (ST6) B-M6615 (ST6) B-M6616 (ST6) B-M6617 (ST6) B-M6618 (ST6) * B-M6619 (ST6) B-M6624 (ST6) B-M6894 (ST6) B-RM7651 (ST6) B-RM7109 (ST24) B-RM8012 (ST55) B(iv)-7853 (ST54) B(iv)-7854 (ST54) B(iv)-7863 (ST54) B(iv)-7867 (ST54) B(iv)-7871 (ST54) B(iv)-7884 (ST54) B(iv)-7885 (ST54) B(iv)-7887 (ST54) B(iv)-7894 (ST54) B(iv)-7909 (ST54) B(iv)-7910 (ST54) B-RM7118 (ST22) B-RM7717 (ST22) B-EAGAN (ST44) B-RM6107 (ST44) B-RM7020 (ST44) B-M6587 (ST44) B-M6594 (ST44) B-M6603 (ST44) B-M6604 (ST44) B-M6605 (ST44) B-M6606 (ST44) A1/A2 B-M6607 (ST44) B-RM7430 (ST44) B-RM7017 (ST31) B-RM7419 (ST53) B-RM6094 (ST64) + NT-1207 (ST13) NT-1209 (ST13) NT-1233 (ST13) + NT-1231 (ST34) NT-1232 (ST34) NT-176 (ST38) + NT-1200 (ST36) NT-1268 (ST36) + NT-285 (ST39) BPF-F3028 (ST65) 0.0 0.2 0.4 1.0 0.6 0.8 Genetic distance Figure 1

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